Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1419 102 2e-16 seq652 91.5 3e-13 >seq1419 Length=601844 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| ||||||||| | || || || | |||||||| |||| Sbjct 538447 AAGACTCTGACAGGAAAGACGATCACTCTTGAGGTCGAGGGGTCTGACACCATCGAGAAC 538506 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || ||| || ||| || || | ||||| Sbjct 538507 GTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAGCAGCGATTGATCTTT 538566 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||||||||||||||| | ||| | ||| |||||| | ||||| ||||| Sbjct 538567 GCCGGCAAGCAGTTGGAAGATGGCCGCACTCTCAGCGACTACAACATACAGAAGGAGTCG 538626 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 538627 ACCCTCCAC 538635 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| ||||| || |||| || || | |||||||| |||| Sbjct 538219 AAGACTCTGACAGGAAAGACGATTACCCTGGAGGTCGAGGGGTCTGACACCATCGAGAAC 538278 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || ||| || | ||||||||| Sbjct 538279 GTGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCAGCGCCTTATCTTC 538338 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | || || ||||| || | ||| |||||| |||| |||||||| Sbjct 538339 GCTGGCAAGCAACTCGAGGACGGAAGAACCCTCAGCGACTACAACATCCAAAAAGAGTCG 538398 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 538399 ACCCTCCAC 538407 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| |||||||| |||| || || | |||||||| | || Sbjct 538950 AAGACTCTGACCGGAAAGACGATCACCCTGGAGGTCGAGGGATCTGACACCATTGAGAAC 539009 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || |||||||| || || || | |||||||| Sbjct 539010 GTGAAAGCCAA-GATCCAGGACAAGGAAGGAATCCCTCCCGATCAGCAGCGTCTTATCTT 539068 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | ||||| || | || | ||| |||||| ||||||| ||||| Sbjct 539069 CGCTGGCAAGCAGCTTGAAGACGGCCGTACCCTCAGCGACTACAACATCCAGAAGGAGTC 539128 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| ||| | | ||||| Sbjct 539129 GACCCTCCACCTCGTTCTTCGTCTTCG 539155 >seq652 Length=32697 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || ||||| ||||| ||||||||||| ||| | || || Sbjct 6893 CAGATCTTTGTGAAGACCCTTACTGGAAAGACGATTACTTTGGAAGTCGAAGGGTCCGAT 6952 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||| ||||||||||| || || || ||| || || || Sbjct 6953 TCGATCGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCAGCAG 7012 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||| || || || |||||| | || ||||| | || | ||| |||||| || Sbjct 7013 CGACTTATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCAACGACTACAACATC 7072 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||| | || || ||| | | ||||| Sbjct 7073 CAGAAGGAGTCAACTTTGCATCTCGTTCTCCGTCTTCG 7110 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| | || || ||| |||||||| Sbjct 6665 CAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAAGGTTCTGAC 6724 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || || || || || Sbjct 6725 TCGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAGCAG 6784 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || || || ||||| | ||| |||||| || Sbjct 6785 CGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTACAACATC 6844 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || ||||| | |||||| | ||||| Sbjct 6845 CAGAAGGAGTCCACGCTTCATTTGGTTTTGCGCCTTCG 6882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181797148072602