Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq893 114 1e-20 seq1419 93.3 4e-14 seq1526 82.4 7e-11 seq652 82.4 7e-11 >seq893 Length=1694367 Score = 114 bits (126), Expect = 1e-20 Identities = 185/261 (71%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 147343 ATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATT 147402 || || |||| ||||| || ||||||||||| ||||| || || ||||| || || Sbjct 1630680 ATCGGGTAGTAGTTGCCGTCGATAATCTTGTTAAGGTTGCGAGTGACGACTTTGGTGATC 1630739 Query 147403 GTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCG 147462 | | ||| ||||| | || | ||| ||| || | | ||| | |||||| ||| Sbjct 1630740 GCATGGAGCTTCTCATAGTCGAAGGTCTTGTCCTC--CTTG-ACGAAGCGGTTCAGCGCG 1630796 Query 147463 ATAGACGCCAGATTGCAGACGGCCGTCTCTT-CGGCGTCGCTGTACTGCACGATTTCGGC 147521 || || |||| ||||| ||||| |||| ||||| || |||||| ||||| |||| Sbjct 1630797 ATCGAAGCCAAGTTGCACACGGCGACTTCTTCCGGCGACG-AGTACTGAACGATCTCGGT 1630855 Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581 ||||||||| ||| || ||| ||||| || ||||| || || || ||||| || Sbjct 1630856 GCACAGGTTAGAGCACTTGATGGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGC 1630915 Query 147582 GTCTTTGAAGAGCATGTACGG 147602 ||| ||| |||||||||| || Sbjct 1630916 GTCCTTGTAGAGCATGTAAGG 1630936 Score = 109 bits (120), Expect = 5e-19 Identities = 271/406 (67%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 147934 TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGG 147993 ||||| ||||| || || | ||| || ||||||| |||| || | |||||| ||| Sbjct 1631363 TTTCCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAGCATGGGGATCAGA 1631422 Query 147994 CCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACG 148053 ||| | | ||||||||||| |||| | | || ||| || | ||| || Sbjct 1631423 CCGTTGGAGGTGCCGTTGGTACCTGCGATCATCGTTCCCGAGGCACGGATGCAGTGAGCG 1631482 Query 148054 TTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAG 148113 |||| || ||||| ||| || |||| || || ||||| | | || ||| || || Sbjct 1631483 TTAAGTCCGATGCCTCCGGCGGACTTAGAGATCAGGGCGCACTGCCACAGGGTCTTGAAG 1631542 Query 148114 ATGCCGTCGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 |||||||||||| ||||| | | || | || | || ||||||| ||| || || | Sbjct 1631543 ATGCCGTCGATGGAGTCGTCGTGCATCGTC-AGGAGGAAGCACGAACTCATCTGGGGCTT 1631601 Query 148173 CCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCAT 148232 | ||||| || ||| ||||| || ||||||||||||| | | ||| | Sbjct 1631602 GCAGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCAGCGATCCGACATGAG 1631661 Query 148233 GCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCAT 148292 | || || || || || | |||||||| || ||| | |||| || || ||||| Sbjct 1631662 GTTGTAGGTTTCGATGGCTGCGTCGATGTCCTCCTTGTGGACTCCCACGGCTACACGCAT 1631721 Query 148293 GAGCATGTGCTGTGGTCGTTCGG-CAACTTGATTGTTGATCTTGAG 148337 ||||||||||| || || |||| | |||| ||||||||| || Sbjct 1631722 AAGCATGTGCTGCGGACGCTCGGTGATCTTG-CCGTTGATCTTCAG 1631766 >seq1419 Length=601844 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | ||||||||||||| ||||||||||| |||| || || ||| ||| Sbjct 538184 ACCAAGTGGAGGGTTGACTCTTTTTGGATGTTGTAGTCACTCAAAGTGCGGCCATCCTCG 538125 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | ||||| || ||||| || ||||| || ||||| Sbjct 538124 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGG 538065 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || |||| ||| || || | || | ||| || Sbjct 538064 ATCTTAGCCTTCACGTTCTCGATGGTGTCGGATCCCTCAACCTCCAAGGTAATCGTCTTT 538005 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || || | ||| || ||||| Sbjct 538004 CCGGTCAGCGTCTTGACGAAGATTTGCAT 537976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||| | |||||| ||||| ||||| || || | Sbjct 539128 GACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTGCCAGCG 539069 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 539068 AAGATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACG 539009 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| || || | || | ||| || || |||||||| || Sbjct 539008 TTCTCAATGGTGTCAGATCCCTCGACCTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTC 538949 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 538948 ACGAAGATCTGCATGCCT 538931 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||||| | || || |||||| Sbjct 538640 ACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCC 538581 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || |||| | |||| | ||||| || ||||| || ||||| || ||||| Sbjct 538580 AACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGG 538521 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || || | | ||| || || | || | ||| || Sbjct 538520 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTT 538461 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || |||||||| || | ||| ||||||||| || Sbjct 538460 CCTGTCAGAGTCTTCACGAAGATCTGCATGCCT 538428 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||| | |||||| ||||| ||||| || |||| Sbjct 537941 GACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCG 537882 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||| ||||| ||||| ||||| || || || || || || | Sbjct 537881 AAGATCAAGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 537822 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| |||| | ||| || || | || | || || || || ||||| || Sbjct 537821 TTTTCGATAGTGTCGGAAGCCTCAACCTCAAGGGTAATGGTCTTCCCCGTGAGAGTCTTG 537762 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 537761 ACGAAGATTTGCATG 537747 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||||||||| |||||||||||||| | ||| | || ||| Sbjct 538412 ACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCG 538353 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | |||| || ||||| || || ||||| || ||||| || || Sbjct 538352 AGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGG 538293 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || || | | ||| || || | || | ||| || Sbjct 538292 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCCAGGGTAATCGTCTTT 538233 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || |||||||| || | ||| ||||||||| || Sbjct 538232 CCTGTCAGAGTCTTCACGAAGATCTGCATGCCT 538200 >seq1526 Length=386723 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||||| | |||||| |||||||| || || || | Sbjct 246344 GATTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCG 246403 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || |||||||| || ||||| || || || || || | Sbjct 246404 AAGATAAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 246463 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||| ||||| | || | ||| || || |||||||| || Sbjct 246464 TTCTCGATGGTGTCCGACGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTC 246523 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| || |||||| || Sbjct 246524 ACGAAGATTTGCATGCCT 246541 >seq652 Length=32697 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||||||||||||| | | ||||| || || |||||||||||| | | || || Sbjct 6877 GCGCAAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCC 6818 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 || |||||||| || || | |||| |||||||| ||||| ||||| ||||| || || Sbjct 6817 GTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTT 6758 Query 132028 ATC 132030 || Sbjct 6757 GTC 6755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601894166320