Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1419 98.7 9e-16 seq1526 84.2 2e-11 seq1347 82.4 7e-11 >seq1419 Length=601844 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||| | || || | || |||| |||||| || ||||| Sbjct 538623 CTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCCAACTGCTTGCCGGCAAA 538564 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| || |||||| || |||||| ||||| | Sbjct 538563 GATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTT 538504 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | || ||||| | |||||||| || || |||| ||| ||||| Sbjct 538503 CTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTTCCTGTCAGAGTCTTCAC 538444 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 538443 GAAGATCTGCAT 538432 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| |||||||| || ||| || || | || || |||||||| || ||||| Sbjct 538167 CTCTTTTTGGATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 538108 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| || |||||| || |||||| ||||| | Sbjct 538107 GATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTT 538048 Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| ||| || ||||||| || ||||| || || |||| || || Sbjct 538047 CTCGATGGTGTCG---GATCCCTCAACCTCCAAGGTAATCGTCTTTCCGGTCAGCGTCTT 537991 Query 35722 CACAAATATCTGCATTC 35738 || || || ||||||| Sbjct 537990 GACGAAGATTTGCATTC 537974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| |||||||| ||| | ||||| |||| || || ||||| || || || Sbjct 538395 CTCTTTTTGGATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCGAGTTGCTTGCCAGCGAA 538336 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| | ||||||||| |||||| ||||| | Sbjct 538335 GATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACGTT 538276 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | || ||||||| || ||||| || || |||| ||| ||||| Sbjct 538275 CTCGATGGTGTCAGACCCCTCGACCTCCAGGGTAATCGTCTTTCCTGTCAGAGTCTTCAC 538216 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 538215 GAAGATCTGCAT 538204 >seq1526 Length=386723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||| | ||| || |||| || || ||||| || || || Sbjct 246347 TCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCGAAG 246406 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||| | | ||||||||| |||||| ||| | | Sbjct 246407 ATAAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 246466 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || || || |||| |||||||| || || |||| ||| ||||| Sbjct 246467 TCGATGGTGTCCGACGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACG 246526 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 246527 AAGATTTGCAT 246537 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 35503 TTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| || |||||||| | | | |||| ||| | ||| ||||| || ||||||| Sbjct 246075 TTTAGTTGCCACCACGGAGACGGAGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGT 246134 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | ||| | || | |||| || |||||||| || || || || | |||||||||| Sbjct 246135 AGTCGCTGAGAGTCCTTCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGT 246194 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | ||| | | ||||||||| |||||| ||| | | | | |||||| | Sbjct 246195 CGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAG 246254 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || | ||||| || || || |||| ||| ||||| || |||||||||| Sbjct 246255 CCTCGACTTCTAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATTC 246311 >seq1347 Length=405773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||||| || || |||| || || ||||| | || | || |||||||||| ||||| Sbjct 393126 CTTACCGGCGAAGATCAGTCGTTGTTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTT 393185 Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||| | | | | | || ||| | ||||||||| | ||||||||||||||||| Sbjct 393186 CGCCTTAACATTCTCGATCGAGTCCGAGGCTTCCACCTCGAGGGTGATCGTTTTACCCGT 393245 Query 35713 CAAAGTTTTCACAAATATCTGCATT 35737 || ||||| || || ||||||||| Sbjct 393246 CAGGGTTTTGACGAAAATCTGCATT 393270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450784798254960