Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq893 95.1 2e-14 seq964 87.8 2e-12 >seq893 Length=1694367 Score = 95.1 bits (104), Expect = 2e-14 Identities = 238/360 (66%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 68475 ATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCT 68534 ||| || || | |||||| || || |||| ||| || || |||||| | || || | Sbjct 1629974 ATAGCTCGGCTTGGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCG 1630033 Query 68535 ATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTG 68594 || |||||||| | || || ||| || | ||||||||||| ||||| | | | Sbjct 1630034 GTCGGCCGCCATCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTC 1630093 Query 68595 TTTGATATCATCTGGAAGGCTCG----TATTTTGAATGGATCCACCATCGGATATAATTA 68650 | | ||| | |||| | ||| || ||| |||||||| || | || || || Sbjct 1630094 CTGAAGATCCTTGGGAATG-TCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGATCT 1630152 Query 68651 TATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGAT 68710 ||||||| || || | ||||| || ||| | | || | || ||||| |||| Sbjct 1630153 CGTTCTTGAGCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGAT 1630212 Query 68711 TAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTT 68770 | || || ||||| || || || | || | ||| ||||||| || ||| || || | Sbjct 1630213 TGACGATCTGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCT 1630272 Query 68771 CCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCA 68830 | | || || || || || || || ||||| || || || || ||||| ||||| |||| Sbjct 1630273 CAATCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCA 1630332 >seq964 Length=244507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 39613 TAAG-CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATG 39671 |||| ||||||||||| | || || || || |||| || | |||||| | Sbjct 33932 TAAGACAGGCGAAGTCGCGGTGAAGTCCTTCGTCTCGGGAGATCAGCTCGTTACTGTGGG 33991 Query 39672 TGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAA 39731 ||||||||||||| || |||||||| |||||||| || |||||||| || || || || | Sbjct 33992 TGAGTCCAGGCATCAGTCCACGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAACCCGAGA 34051 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGC 39759 | || |||||||| || || || || || Sbjct 34052 AAAAAATGCCTTCAACGGCGGCGAACGC 34079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895388105680