Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1419 113 4e-20 seq1526 104 2e-17 seq893 91.5 1e-13 >seq1419 Length=601844 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | || | ||| || || || || || || || ||||||||||| Sbjct 537974 CCTCCGCGAAGACGAAGAACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 537915 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| ||||| || |||||| | || | ||||| ||||| || || Sbjct 537914 AGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGGA 537855 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | |||| | |||||| | || ||||| Sbjct 537854 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCAACC 537795 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||| ||||| || || ||||||||||| Sbjct 537794 TCAAGGGTAATGGTCTTCCCCGTGAGAGTCTTGACGAAGATTTGCAT 537748 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||| | | | || ||||||| ||||| || || Sbjct 539131 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTGCCA 539072 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| ||||| || || | || || || || ||||||| |||| Sbjct 539071 GCGAAGATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTC 539012 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || || |||||||| Sbjct 539011 ACGTTCTCAATGGTGTCAGATCCCTCGACCTCCAGGGTGATCGTCTTTCCGGTCAGAGTC 538952 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 538951 TTCACGAAGATCTGCAT 538935 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | ||||| || | || || |||||||| || |||||||| | Sbjct 538204 TGCCTCCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAC 538145 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| | || |||||||| || ||||| | || | ||||| || || || | Sbjct 538144 TCAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGG 538085 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| ||||| |||||| |||| | | || | ||||| | | |||| Sbjct 538084 GAATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGGATCCCTCAA 538025 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | || || ||||| || || || ||||||||||| Sbjct 538024 CCTCCAAGGTAATCGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCAT 537976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | ||||| || | || || |||||||| || |||||||||| Sbjct 538432 TGCCTCCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGC 538373 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | |||| ||||| || || || ||| | || || ||||| || || || | Sbjct 538372 TGAGGGTTCTTCCGTCCTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAG 538313 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| |||| | | || | ||||| | | || | Sbjct 538312 GAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGA 538253 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || |||||||| ||||| ||||| ||||| Sbjct 538252 CCTCCAGGGTAATCGTCTTTCCTGTCAGAGTCTTCACGAAGATCTGCAT 538204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | ||||| || | || || || || || || |||||||||| Sbjct 538660 TGCCTCCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGC 538601 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| | ||| || ||||| | || | ||||| || || || | Sbjct 538600 TGAGAGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGG 538541 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| ||||| |||||| |||| | | || | ||||| | | || | Sbjct 538540 GAATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGA 538481 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | || || |||||||| ||||| ||||| ||||| Sbjct 538480 CCTCAAGAGTGATCGTCTTTCCTGTCAGAGTCTTCACGAAGATCTGCAT 538432 >seq1526 Length=386723 Score = 104 bits (114), Expect = 2e-17 Identities = 167/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 27010 cATAATTA-TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATA 27068 |||| ||| ||||| || || | || | |||| ||| | ||| || || || || || Sbjct 246071 CATATTTAGTTGCCACCACGGAGACGGAGGACCAGATGGAGCGTGGATTCCTTCTGGATG 246130 Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128 ||||||||||| | | | |||| || ||||| || || ||| | ||||||||||| Sbjct 246131 TTGTAGTCGCTGAGAGTCCTTCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGC 246190 Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188 || || || || | || || || || ||||||| || | | | || | ||||| Sbjct 246191 TGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCC 246250 Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||||||| || || | || || |||||||| ||||| ||||| ||||| Sbjct 246251 GAAGCCTCGACTTCTAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 246309 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||| ||| | || || || || || || ||||||||||| Sbjct 246311 CCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTG 246370 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||||||||| || || || ||| | || || ||||| || || || || Sbjct 246371 AGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGG 246430 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | | || | ||||| | || || ||| Sbjct 246431 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGACT 246490 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || |||||||| ||||| ||||||||||| Sbjct 246491 TCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 246537 >seq893 Length=1694367 Score = 91.5 bits (100), Expect = 1e-13 Identities = 221/332 (67%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 130538 ATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATG 130597 ||||| ||||| ||||| || || || | ||||| | ||| || ||||| || |||| Sbjct 1629996 ATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCGGTCGGCCGCCATCTC---CATG 1630052 Query 130598 GTTTTATTTTTC---ATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATG 130654 | | || | | || |||||| | |||||||| | ||| || | ||||| ||| Sbjct 1630053 ATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTCCTGAAGATCCTTGGGAATG 1630112 Query 130655 CGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCG 130714 || || ||| | | ||| || | || || ||||| | | || ||| Sbjct 1630113 TCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGATCTCGTT---CTTGAGCTTGTCG 1630169 Query 130715 T---ACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCA 130771 | ||| |||| || |||||||| | || |||| ||| | ||| ||||| ||| Sbjct 1630170 TCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGATTGACGATCTGAAAGTCA 1630229 Query 130772 CCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTG 130831 || | |||||||| | | |||||||||| ||| |||| |||| || ||||||||| Sbjct 1630230 CCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCTCAATCGACTCGTTGTTG 1630289 Query 130832 CCGAATATTTGTGCTGTAGTTGCGGTGGGCAT 130863 |||| || || || || | || |||||||| Sbjct 1630290 CCGAGGATCTGAGCGGTGGACGCTGTGGGCAT 1630321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424926310576944