Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_027993.1 Length=43587 Score E Sequences producing significant alignments: (Bits) Value seq31 686 0.0 >seq31 Length=5916 Score = 686 bits (760), Expect = 0.0 Identities = 975/1366 (71%), Gaps = 34/1366 (2%) Strand=Plus/Minus Query 25236 CGCGCGGCGACAACCTCGTCCAGCGTGTCTTTAGCAACGATGTGGTACAGGAACACCGGC 25295 || ||||| | || |||||||||||| | || || ||| |||| | ||||||||| Sbjct 4563 CGGGCGGCCAGCACTTCGTCCAGCGTGCCCTTGGCCTGGATCAGGTAAATGAACACCGGG 4504 Query 25296 CTCTCGTGTCCTGCCTGTTTCTGGCGGACCGGGCCTATTCGCTCGACAACCTGCAAATAG 25355 | | ||| || ||||| ||||||| ||||| || || ||||| || | |||| ||| Sbjct 4503 CGCGGGTGACCGGCCTGCATCTGGCGCACCGGACCGATACGCTCCACGATCTGCGCGTAG 4444 Query 25356 TGCTCAAGGTTCCA-GCCTTGCGAGATGAATGCCAGATGATGTCCGCCGTCCTGTAAATT 25414 ||||||| |||||| | | || || |||||||| || || ||||| ||||| | || Sbjct 4443 TGCTCAAAGTTCCATGTGTCGCT-GAAAAATGCCAGGTGGTGCCCGCCATCCTGCATGTT 4385 Query 25415 CAAACCATGTCCGGCCGACGCAGGATGCACGCATAAGATTTCGATTTCGCCGCGGTTCCA 25474 | || || || || ||||| || || ||||| ||||||||||| | || |||||| Sbjct 4384 GAGGCCGTGGCCCGCGGACGCCGGGTGAACGCACAAGATTTCGATCTGACCTTTGTTCCA 4325 Query 25475 TGCTTCCATCTGCTTATTACCCTTAGCACCTTTCGCGAATGCCTGCGCCTGCGGGAAACG 25534 || | ||| ||||| ||| || || ||| |||||||||||||||| || Sbjct 4324 GCGCTCAACCTGGCGGTTACCGGCAGCGCCCTTTTTGAACTCCTGCGCCTGCGGGAACCG 4265 Query 25535 TTTCAGGATACGCTCCAGTTCGTGCTTGAACTGATAGGCTACCAGTAGCGGAGCACCCTG 25594 ||||| ||| ||| |||| ||||||||| |||||||||| |||| ||||| || || Sbjct 4264 TTTCAAGATGCGCGCCAGGTCGTGCTTGTACTGATAGGCCACCAACAGCGGGGCGCCGGA 4205 Query 25595 TAACTCCTCAACAATTGACTCCAGCGCATCCAGTTTCATGTCGTGCACTTTCTCCCAGTC 25654 ||||| || | ||| |||||||| || ||||| ||| ||||||||| ||| |||| || Sbjct 4204 CAACTCGTCGATAATCGACTCCAGGGCGTCCAGCTTCGCGTCGTGCACCTTCGCCCACTC 4145 Query 25655 TTTGGTTGCTTCTCCGTCTGGCCCTGATACATACACAGCACCAGAAGCAATCTGCAAACA 25714 | | || |||||| || | |||||||| || || || ||||||| || Sbjct 4144 GGTAGACCGCTCGCCGTCTTCGCCGGTCACATACACCGCCCCGCTGGCGATCTGCAGGCA 4085 Query 25715 CTTTGACGTCTTTGCCGCGGCGTTAGCCGCTTCAACTTCTCCGCTTTCCAGTTCCGCGAA 25774 || | || ||||| ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 4084 TTTGGCGGTACGGGCCGCCGCGTTGGCCGCTTCGACCTCGCCGCTATCCAGTTCGGCGAA 4025 Query 25775 TAACTTTTCCTCCATATCGATGTACGCCTGACGCGCTTTCTTCGGCAGATCTATTTCAAC 25834 || || ||||||||| || ||||||||| ||||| || |||| ||| | | || Sbjct 4024 TAGCTGTTCCTCCATTTCCTTGTACGCCTTGCGCGCCTTTGGTGGCATATCGACGACGAC 3965 Query 25835 CGGCACTATAATAGGCGCTTCACAACCGAACCACTCAGCGGCGTCAATCGTGAGACTAAT 25894 ||| || | | |||| ||||| || || |||| || ||||| | || ||||| | Sbjct 3964 CGGGACGACGACAGGCTTGTCACAGCCAAAGAACTCGGCCGCGTCCACGGTCAGACTGAC 3905 Query 25895 GTCCTTCATCTTCTGGTGGATCTCATTATCTGCACCAGGAC---GCGCATGATACTCCCG 25951 ||| |||| |||||||||||||| | || ||||| | | |||| | || | | | Sbjct 3904 GTCTTTCAGTTTCTGGTGGATCTCGGTGTCGGCACCGCGGCGGGGCGCGT-ATTCGCGGG 3846 Query 25952 CGCCATCGCCGACTTACCTTTTTGCACAGAGTTGAACCAGCGGTCGGTGAACGCAGTGTA 26011 || | | || | ||||| ||||| ||| |||||||||| |||||||| |||||||| Sbjct 3845 CGGCGT-AATGA-TCTCCTTTCTGCACCGAGGTGAACCAGCGATCGGTGAAAGCAGTGTA 3788 Query 26012 CGATGAACCGAGGCGCTCGCCAGCGTCGATAAACCAGTTCTGGCCCCACAGGTCTTTGAG 26071 || ||||| |||||||| || |||| ||||||||||| |||||||| |||||||| Sbjct 3787 AGAGCTGCCGAGACGCTCGCCGGCATCGACGAACCAGTTCTGACCCCACAGATCTTTGAG 3728 Query 26072 GCCGTTAGGCGACGGTGTGCCCGTCAGATTGATGAAACGCTTAACTTTACCGAACGCCAC 26131 |||||| || || || || || ||||||||||| || ||||| || ||||||||||| || Sbjct 3727 GCCGTTCGGTGATGGCGTACCGGTCAGATTGATAAAGCGCTTCACCTTACCGAACGCTAC 3668 Query 26132 TTTGCTGAGCGCCTTTGCCCGCTTGCTACCACCAGAACGGCTACGGAATGACTTCAGTTT 26191 ||| ||||| | ||| || ||||||||||| || || ||| ||||| || || || || Sbjct 3667 TTTACTGAGTGTCTTCGCGCGCTTGCTACCGCCGGATTTGCTGCGGAACGATTTAAGCTT 3608 Query 26192 CGTACTCTCATCTGCAACGATAACCGTAAAAGGCCAGTCGTCTTTGCCGTAGTAGTCAAT 26251 ||| ||| || ||||| || || || || ||||| |||| |||||| ||| | | Sbjct 3607 CGTCGACTCGTCGGCAACAATGACGGTGAATGGCCACGCGTC---GCCGTAATAGCCGAC 3551 Query 26252 CAGCCACTCGATAACTTCGTAGTTGGTACACACCACGTTAACATCTGACTCCAGCGCCGC 26311 || ||| ||||| || || ||||| ||||||||||| | ||| | ||||||||| Sbjct 3550 CAACCAGTCGATCACCTCATAGTTAACGCACACCACGTTGAAATCGTCGTTCAGCGCCGC 3491 Query 26312 GATGCGGCGTTTCTCTGAACCTGTCGCATCTACGACACGCAGGCACGGGAATCGCCATTT 26371 | |||| |||| || || | || ||||| |||||||| ||||| ||| || Sbjct 3490 CAGGCGGTCGGCCTCTTTGCCGGTGCCGTCCACGACGCGCAGGCATGGGAAATCCCACTT 3431 Query 26372 CTCTTGTTCTGCCGGCCATGTACCTGATGCAACGCGCAACGGGGCGAGAATTAACACGCG 26431 | | ||||| |||||||| || |||||||||||||||| ||| || || || | ||| || Sbjct 3430 CACCTGTTCGGCCGGCCAGGTGCCTGATGCAACGCGCAGCGGCGCCAGGATAAGCACCCG 3371 Query 26432 GTCGTCGTCCGTAAGTTGCC-----------------CGTTG-----CGGAACAGGCGGT 26469 ||| || | | |||| || | ||| |||||||||||| Sbjct 3370 ATCGCCGGTC-TGAGTTACCGGGTCCCAATCTTCCAGCTTTGAGGATTGGAACAGGCGGT 3312 Query 26470 TTAAAGTCCACAGGACGCTGCCAGTCTTCCCGGCGCCCATGCTCGCCCAAATATTACAGC 26529 | | ||||||| | | || ||||| |||| |||||| ||||||| | ||| |||| Sbjct 3311 TCAGCGTCCACATGGTGGCCCCGGTCTTGCCGGAGCCCATTGTCGCCCACACATTGCAGC 3252 Query 26530 GATGGTGTTGCAGCATGAACGAAGTCATGAGCTTCTGGTATTCGCG 26575 | |||| ||||||| | ||||| || || || |||||||| Sbjct 3251 GTGGGTGACGCAGCATATGCCGCGTCATTAGTTTTTGATATTCGCG 3206 Score = 439 bits (486), Expect = 7e-119 Identities = 701/999 (70%), Gaps = 8/999 (1%) Strand=Plus/Minus Query 29419 TAGTACCCACGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCCGCAAATCGTAACGTACGT 29478 |||||||| |||||||||||||||||||||||||||||||| || | || | ||| ||| Sbjct 1184 TAGTACCCGCGCGCCAGGTTCTGCGGCTGGAAGCCTTTACCGGCCCAGCGCAGCGTGCGT 1125 Query 29479 TTAGCTCCACCATACTGGATGCAACCGCGACGGCGGTCGTCAGACGAGCGGCCTAACAGC 29538 ||||| || || ||||| | ||| ||||| ||||| |||| ||| |||| | |||| Sbjct 1124 TTAGCCCCTCCGTACTGCAGGCACCCGCGGCGGCGCCCGTCGCGCGACAGGCCGAGCAGC 1065 Query 29539 AGCGGGTTATATTTCGTTGACGCAGTGGATGCCGCCCCGAGGCGCATTTCTATAATCGTG 29598 ||||| ||||| || || || ||||| ||||| || ||||||||||| || | | | Sbjct 1064 AGCGGAGCGTATTTTGTCGATGCGGTGGACGCCGCGCCCAGGCGCATTTCGATCAGCTCG 1005 Query 29599 CGGGCGTCGTCCGGTAAATCATCGTCAGCAAGCAGGTCGTTAAGCGTAGACTTCTGCGCG 29658 || || |||||||| | || ||| || ||||||||||| ||||| || ||||||||| Sbjct 1004 CGCGCCTCGTCCGGCAGGTCGGGGTCGGCCAGCAGGTCGTTTAGCGTCGATTTCTGCGCG 945 Query 29659 TTGTGGATGCGATGCGCAGGTGCCAGTTCACGCAGAATCGGCAGGAAGTCCTTACCTGTA 29718 || |||| |||||| || ||||| || ||||| ||||||||||| || || Sbjct 944 TTCGGGATTTCATGCGCCGGCGCCAGGTCGCGCAGCGTCGGCAGGAAGGAGGCCCCGGTC 885 Query 29719 AGCGAGCCGCCGTATTTACGTTG--GGCTTCTTCCTGTAACTGTGCCTTGTGTTTCTCCA 29776 || || |||||| | | ||| ||| || |||| | || | |||||| | || Sbjct 884 AGGCCGCTGCCGTACT--CCTTGGTGGCCTCAGCCTGCAGCTCTTGCTTGTGGCGCGTCA 827 Query 29777 CAGCTTCAATTGCGGCTTCCGCCAGCGCAACGTCGACCTTAAACCCGCGGTCGTTAATTA 29836 | || || || || || | |||| | ||||| || || ||||||||||| || | Sbjct 826 CGGCCTCGATCGCTGCCTTGGCCAAGTCGACGTCCACACAGAAGCCGCGGTCGTTGATCA 767 Query 29837 ACTGGTCCAGTTCCAGTACACGGTCTTCGAACTCGGAGTTACCCCAACGCGGCAACTTAT 29896 |||||| ||| |||| | || || ||||| ||| ||||| ||| | | Sbjct 766 GCTGGTCAAGTACCAGGATTTCGTTCTCCTTCTCGGTGTTGCCCCAGGTCGGGATGCGGT 707 Query 29897 GGAACACTTCACGCATCGCGGTGATGTCGCTAACGGCGTACTTGATGAACAGCGCCCACT 29956 |||| || ||||| | ||||||||| ||||||||||||||| ||||||| Sbjct 706 AATACACCTCGCGCATGGACAGGATGTCGCTGCGGGCGTACTTGATGAATTTGGCCCACT 647 Query 29957 CATCCGGGTGCGTTTCAGCAGTGTAGCGGCGAATTTTGTAGTTCTTCGGCGTCGGTTTAG 30016 | || |||||||| | || ||||||||||| | ||||| ||| ||||| || ||| Sbjct 646 CGTCGGGGTGCGTAGCGGCCGTGTAGCGGCGCACCTTGTACGACTTAGGCGTAGGCTTAC 587 Query 30017 AGAAACGCTGAATAAGCGCTTTGCCTCGTTTGTCTTTCGCGTTGTCTGCAGACACGCCAA 30076 |||| || | || ||||| ||||| ||||| || ||||| | || ||||| | Sbjct 586 AGAAGCGGTTGATCAGCGCCTTGCCCGCCTTGTCCTTGGCGTTCTGCTCATCGACGCCTA 527 Query 30077 GCACTTCGCACAATGCGTCGAGTGAACCCGGCAGCGCGTGACGAAACGCCCAAATCATCG 30136 |||| ||| | ||| || || ||||||||||||||| || |||||| ||||| | Sbjct 526 GCACGGTGCATAGTGCATCCAGGCTACCCGGCAGCGCGTGGCGGAACGCCATGATCATGG 467 Query 30137 TATCAATGGTGTT-GCTTACGGGAATATCAAAACCCCAGCAGTGCTTCATGATGAGTCTG 30195 | || | | || || |||| ||||| | |||||||| | ||| | || | | Sbjct 466 TGTCTTCGATATTGGCCGGCGGG-ATATCGTAGCCCCAGCATTCTCGCATCAGCAGCCGG 408 Query 30196 TCGAACATTGAGCCGTTGTGCCACACCA-TCTTAATACGGCTGTTTGGTTTCACCAGACG 30254 ||||||| |||||| ||| |||| || | ||| | | || || |||| Sbjct 407 TCGAACAGCAGGCCGTTCTGCATTACCAGTCGGCTTTCGG-TATCGGGCCTCGCCAGTTC 349 Query 30255 GCGTAACGCGCGGTGCAAATCACCCGGCATGTCGCTGCCGTTGGTGCAATCCCATACCTG 30314 ||| | ||| || | || || | ||||||| |||||||| |||| ||||||||||| Sbjct 348 GCGCAGCGCACGTTTCAGGTCGCGCGGCATGCGGCTGCCGTCGGTGGCGTCCCATACCTG 289 Query 30315 CACAGGCTCGTCGTCAAAAGCATATGTGCAGATTAGAACTTCGGTGGTTGGATGTTCGGC 30374 ||| || ||||| || || || ||||||| | | |||||| | | | ||||| || Sbjct 288 CACCTTTTCATCGTCGAACGCGTAGCTGCAGATCATGATTTCGGTAGATAGGTGTTCCGC 229 Query 30375 GTAAGCGTAGGAGCCGACTTTCTTCAAATCGGCTTCGGA 30413 || || |||| |||| ||| ||||| ||||||||||| Sbjct 228 ATACGCATAGGCGCCGCATTTTTTCAAGTCGGCTTCGGA 190 Score = 275 bits (304), Expect = 2e-69 Identities = 451/638 (71%), Gaps = 18/638 (3%) Strand=Plus/Minus Query 28765 CCCGGATTGCGGATAGCTGCCATAGCTGCGTCTTCAATATCCCGCCAGAAAGCTACTGTT 28824 |||||||| ||| || ||| || |||||||||| |||| ||||||| || ||||| Sbjct 1910 CCCGGATTCTTGATCGCCGCCTGCGCCGCGTCTTCAAGATCCTGCCAGAATGCCACTGTC 1851 Query 28825 TCCGGGTGTGACTCACGCCACATACGCTTGATAGCGTCGCAGGTACGCCACACTTTCTTA 28884 |||||||| ||||| |||||||| |||||||||||||||||||| |||||| || Sbjct 1850 TCCGGGTGCGACTCGCGCCACATGCGCTTGATAGCGTCGCAGGTCATCCACACCTTGCGC 1791 Query 28885 TCAAGAATATAAGATGGTCGGTCATCATT-TTCACCTGGACGTGGTGGTCGCTTGG-CTT 28942 || || ||||||||||| | || || ||| ||| | ||||| ||| Sbjct 1790 GGCAGGTCGTACGATGGTCGGTCGGCTTTCTTGCCCTT----TGGCGCGCGCTTATTCTT 1735 Query 28943 C--CTGAATACGCGCCCACTCATATCCACGTGCG-GTAGCAGCCCAGATGTAGTCGGGGA 28999 | |||||| || || | || | || || ||| | || ||||| |||| || |||| Sbjct 1734 CTCCTGAATGCGGGCGAATTCGAAGCCGCG-GCGCGCGGCGGCCCAAATGTGATCCGGGA 1676 Query 29000 AAGTCCCGTCCATTGTTTTTGCCATATCAACGAGGTCAAGGCCGAGGTTCTTGGCGAACT 29059 | || || ||||| || ||||| | ||||| ||||||||||| |||||||||| Sbjct 1675 ATGTGCCATCCATGTCTTGCGCCATCTGGTACAGGTCGAGGCCGAGGTTTTTGGCGAACT 1616 Query 29060 GTACGAATGCGCCGACACCAC-CCGC-GTAGCCAAGTCCAAGTTCGCATGCCTTACCAAT 29117 | | ||| ||||| |||| | |||| ||| || || || |||||||| ||||| || || Sbjct 1615 GCAGGAA--CGCCGCCACCCCGCCGCCGTACCCCAGGCCGAGTTCGCAGGCCTTGCCGAT 1558 Query 29118 CTGGCGTAAGTCTTTACGTTCTTTCTTAATGTAATCCGGCTCCATGCCGAACATCTTGCC 29177 ||| |||| |||||| || | | ||| || | | || || | || |||||||||||| Sbjct 1557 CTGCCGTAGGTCTTTGCGATTCTCCTTGATAAAGCCGGGGTCGAGGCGGAACATCTTGCC 1498 Query 29178 TGCGGTTACGCAGTAAATATCCAG---CCCGGCACGGAACGTATCAAGCGCGGTTTCTTC 29234 || ||| ||||||| || || | | | ||| || || || || | ||| Sbjct 1497 GGCCGTTTCGCAGTAGATGTCGCGTTTTTTGTCGGAGAAGACGTCCAGAGCTGTATGTTC 1438 Query 29235 GCCAGCCAGCCACGCCAAACCGCGGCCTTCAACGTTCGAGTAGTCGGCGACGACAAACTT 29294 ||| | | ||| |||| ||||| ||||| ||||| || |||||||| || || || || Sbjct 1437 GCCCGAAATCCAGGCCAGCCCGCGCCCTTCCACGTTTGAATAGTCGGCAACAACGAATTT 1378 Query 29295 ATGTCCGGCTTCCGGGATAATGCAGCTGCGAACCGTAGATGCCGTTAGCTTGGCTACATC 29354 || || ||| |||| |||||| || || || | ||| | ||||||||||| || Sbjct 1377 ATTACCTTTTTCAGGGACAATGCATGATCGCACGGTGGTTGCGGCCAGCTTGGCTACGTC 1318 Query 29355 AAAACGGCGATGTGCTCGGCCCTTAAGTA-ATGCTGAA 29391 ||||| ||||| || ||||| || || | ||||||| Sbjct 1317 GAAACGTCGATGCGCGCGGCCTTTCAGCAGCTGCTGAA 1280 Score = 120 bits (132), Expect = 8e-23 Identities = 184/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 27632 ACTATAATAGCTAGCTATTAGGTCGTCAACCTGT--TTAAACGAACCAACGACAAAAACA 27689 |||||||||| | || |||||| ||||||||| || | || ||| ||| ||| Sbjct 2756 ACTATAATAGTTTGCGATTAGGCTGTCAACCTGCGATTTGCTG--CCGACGGTAAACACA 2699 Query 27690 TTCGCACCACGTTTACGCATCCGCTCATGTTCCCGTAGCTGGTGCGGGTCTGGCTTCGTG 27749 || || || || || |||| || || || || ||| |||||||||||||| ||| Sbjct 2698 TTGGCGCCGCGCTTTTGCATGCGTTCGTGCTCGCGTGCCTGGTGCGGGTCTGTGCCGGTG 2639 Query 27750 TTCTCGTCTTTCTTAACCTCGACGAACCAGACTATGCCGCCGGGGAGAATTACCAGCAGG 27809 |||||||||||| |||||||||||||| || | ||| | || |||| |||||||| Sbjct 2638 GCCTCGTCTTTCTTCACCTCGACGAACCACACGACGCCTCTCGGCAGAAGCACCAGCAGA 2579 Query 27810 TCTGGGGCGCCGGAACGCCCCTCGTAGGAGAGTTTGCGAACGAGGCCGCCAAGGGCCTCG 27869 || ||| || ||||||||||| || ||| | || ||| |||| || ||| Sbjct 2578 TCGGGGCACCCATTGCGCCCCTCGTATCGGATTTTTCTTACCAGGGCGCCGAGCTTCTCA 2519 Query 27870 AA-TCGGTCTTTTGCGTA 27886 || |||| |||| ||||| Sbjct 2518 AACTCGG-CTTTGGCGTA 2502 Score = 96.9 bits (106), Expect = 1e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 28462 GCCAACAAATCACGGCACAGCGCCTGAGTGCAGTTTTCCACCAGTTTACCAGAGTAGGTG 28521 |||| ||| || |||||||||||||| | ||||||| |||| || || ||||||| Sbjct 2276 GCCAGCAAGTCGCGGCACAGCGCCTGCACGATGTTTTCCGCCAGCTTGCCGCCGTAGGTG 2217 Query 28522 TACTGGAAGCCCCACTGACGGGTTAACTGGTTTTCGCCCTGGTACTTGATGCG 28574 |||| |||||||||| || || |||||| ||||||||||| |||||||| Sbjct 2216 AACTGCCAGCCCCACTGCCGTGTGGTCTGGTTCTCGCCCTGGTATTTGATGCG 2164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139354215105556