Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq964 82.4 9e-11 seq887 82.4 9e-11 >seq964 Length=244507 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 ||||| || || || ||||| ||||||||| || || | |||||||||||||| || Sbjct 34067 GTTGAAGGCATTTTTTTCTCGGGTTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGTGGA 34008 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945 || ||||| || ||| | | |||||||| ||||| || ||||| ||||| |||| Sbjct 34007 CTGATGCCTGGACTCACCCACAGTAACGAGCTGATCTCCCGAGACGAAGGACTTCACC 33950 >seq887 Length=33483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 199/298 (67%), Gaps = 5/298 (2%) Strand=Plus/Minus Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| || ||| ||||| | ||| | ||| | ||| || || ||| Sbjct 22868 ACCATCCATCTCCACCAGAAGCTGGTTTAGAGTGTTCTCCTGCTCAGAATGGCCTCCCAT 22809 Query 9676 ACCACCAG---CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 || || | | |||| ||| ||||| || || ||||||||||| | |||||| Sbjct 22808 TCCTCCTTTGCCTCCACGTTTGCGTCCGACGGCGTCGATTTCATCAATGAACAGGATGCA 22749 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| | | || |||| | || || ||||| | || || || || Sbjct 22748 GGGCGAATTCTTTCTGGCAGTGGCAAACATGTCGCGGACACGGGCCGGACCTACGCCGAC 22689 Query 9793 AAACATCTCCACAAAGTTTGCGGCGG-AACATTGGATGAAGGGGACATTAGATTCACCCG 9851 ||||||||||| || | | || ||| || ||||| || ||||| | ||| || | Sbjct 22688 AAACATCTCCAAGAATTCGGATCCGCTAACGGTG-ATGAAAGGCACATTGGCTTCTCCTG 22630 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 | |||| |||||| |||||||||||||||||||| ||| | ||| | |||||| Sbjct 22629 CCGTGGCCTTGGCGAGGAGAGTCTTACCCGTACCTGGAGGACCGGTGAGAATGGCACC 22572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249411832880