Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq893 223 4e-53 seq964 93.3 5e-14 >seq893 Length=1694367 Score = 223 bits (246), Expect = 4e-53 Identities = 653/993 (66%), Gaps = 60/993 (6%) Strand=Plus/Minus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 ||| |||| || || || || |||||| ||||||||||||| ||| |||||| || Sbjct 1630954 CAGATCGAAACTGGAACTCCTTACATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAAC 1630895 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCC 19912 ||| ||||| | || | ||||||| || |||||||| || || ||| | || || Sbjct 1630894 CAGCAGAACCTGGGAACCATCAAGTGCTCTAACCTGTGCACCGAGATCGTTCAGTACTCG 1630835 Query 19913 AAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTG--CCGACTTTCGTCA 19970 |||||| || |||||||| || |||| || | ||| ||| ||||||| Sbjct 1630834 TCGCCGGAAGAAGTCGCCGTGTGCAACTTGGCTTCGATCGCGCTGAACCG--CTTCGTCA 1630777 Query 19971 ---AGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTA 20027 ||| | ||||||||| || || | | | | | ||| |||||||| || | Sbjct 1630776 AGGAGGACAAGACCTTCGACTATGAGAAGCTCCATGCGATCACCAAAGTCGTCACTCGCA 1630717 Query 20028 ATCTGAATCGCGTCATCGATCGGAACTTTTACCCGA---CCGAGGCGGCGCGCAA-GTCG 20083 | || || | ||||| | |||| ||||||| |||||| ||||| ||| Sbjct 1630716 ACCTTAACAAGATTATCGACGGCAACTACTACCCGATTCTCGAGGC----CGCAACGTCC 1630661 Query 20084 AATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATG 20143 |||||||| ||||| || || | || ||||| || ||||| || |||| |||||||||| Sbjct 1630660 AATATGCGTCACCGTCCTATTGGAATTGGCGTTCAAGGCCTTGCGGACGCTTTCATGATG 1630601 Query 20144 CTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCC 20203 | || || | ||| | |||| | || || || | |||||| | |||||||| | | Sbjct 1630600 ATGCGCTTCCCTTTCACCAGTCCCGAAGCCCGTGATATGAACAAGAGAATCTTCGAAGTC 1630541 Query 20204 GTGTACCACGCGGCCCTCCTGGAA---TCGTGCGAACTCGCCAAAGAGGACGGCCCGTAC 20260 | |||||||| | || |||||| || |||||||| || | || |||| || ||| Sbjct 1630540 ATCTACCACGC--CTCT-CTGGAATCTTCATGCGAACTGGCGGAGCAGTACGGACCATAC 1630484 Query 20261 GAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGG------ 20314 || || | | |||| ||||| | | || | |||||| || |||||| Sbjct 1630483 GAAACCTACGAGGGTTCGCCTGTGAGTCGTGGCGTTCTCCAGTACGAGATGTGGACGACT 1630424 Query 20315 ------GGC---------GTCACTGAGAATGAGT---TTTGGAGCGCCCTCAAGGTTGAG 20356 ||| || | | || ||| ||| || | |||| || Sbjct 1630423 GAAGACGGCAAGCCCGTGGTGCCCACGGATCAGTGCGACTGGGCCGTGTTGAAGGAGAAG 1630364 Query 20357 AT---CAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCG 20413 || |||| ||||| | |||||| | || ||||| || ||||| || || || Sbjct 1630363 ATTGCCAAG---CACGGCGTGCGCAACAGTCTTCTGGTCGCACCGATGCCCACAGCGTCC 1630307 Query 20414 ACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC--T 20471 ||||| |||||| | || ||||||||| | | ||||||||||| ||||||| ||| | Sbjct 1630306 ACCGCTCAGATCCTCGGCAACAACGAGTCGATTGAGCCGTACACCTCCAACATTTACAGT 1630247 Query 20472 TGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGC 20531 || ||| | || ||||||| || || || || || ||| | || || Sbjct 1630246 CGCCGCGTCCTCT--CCGGTGACTTTCAGATCGTCAATCCTCATCTGCTGAAAGATCTGG 1630189 Query 20532 AGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTC-CGAGCCGGCGGGAGC 20590 || | | ||||| ||| | ||||| || || || ||| ||||| | Sbjct 1630188 TTGAGCTGAACCTGTGGGACGACAAGCTCAAGAACGAGATCATCTCGA-AGGGCGGATCC 1630130 Query 20591 GTCC-AGGCATTG--GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAA 20647 ||| ||| || | || || ||| || | || ||||| | |||| ||| || |||||| Sbjct 1630129 ATCCAAGGTATCGCCGACATTCCCAAGGATCTTCAGGACTTGTACAAGACAGTTTGGGAA 1630070 Query 20648 ATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCC 20707 || | |||||| |||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 1630069 ATTTCGCAGAAGGACATCATGGAGATGGCGGCCGACCGCGGCGCCTACATCGACCAGTCG 1630010 Query 20708 CAGTCGCTCAATGTCTTCATGGAGAATCCGAGC 20740 |||||||| || || ||| | || |||||| Sbjct 1630009 CAGTCGCTGAACATCCACATAGCCAAGCCGAGC 1629977 Score = 217 bits (240), Expect = 2e-51 Identities = 1060/1680 (63%), Gaps = 150/1680 (9%) Strand=Plus/Plus Query 78265 CTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCG 78324 ||||| || | ||| |||||| |||||||| |||||||||||||| || ||||||||| Sbjct 1629978 CTCGGCTTGGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCGGTCG 1630037 Query 78325 GCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTC 78384 |||||||| || |||| ||| |||| ||| ||||| | ||| ||| | | ||| Sbjct 1630038 GCCGCCATCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTCCTGA 1630097 Query 78385 AGCTCTTCCTGGATGTCCAGCG----CTTGTACGCTCCCACCGGCTCGC-ACAATTTCAT 78439 || || | | ||||| ||| |||| | | || || ||| | || || | Sbjct 1630098 AGATCCTTGGGAATGTCG-GCGATACCTTGGATGGATCCGCCCT-TCGAGATGATCTCGT 1630155 Query 78440 TCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGACCAGGTGCCGGTTAA 78499 |||| | | || ||| | || | || ||||| | ||| || | || | Sbjct 1630156 TCTTGAGCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGATTGA 1630215 Query 78500 TCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGA 78559 || || || |||| ||| ||||| ||| ||||||| ||||||||||| | Sbjct 1630216 CGATCTGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCTCAA 1630275 Query 78560 AAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTA 78619 | ||||||||| || | |||||| ||||| || || || ||||| ||||||||||| | Sbjct 1630276 TCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCAGAA 1630335 Query 78620 GAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTA----GGCC--GTCCCAAA-AT 78672 || || || | || ||| | |||| |||| | |||| ||| || || Sbjct 1630336 GACTGTTGCGCACGCCGTGCTTGGCAATCTTCTCCTTCAACACGGCCCAGTCGCACTGAT 1630395 Query 78673 TCAT-------------TCGCCG----CGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 | | | |||| | || |||||| || || || | || Sbjct 1630396 CCGTGGGCACCACGGGCTTGCCGTCTTCAGTCGTCCACATCTCGTACTGGAGAACGCCAC 1630455 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG 78775 | | ||||| |||| | | || ||||| | ||| | || || || |||||||||| Sbjct 1630456 GACTCACAGGCGAACCCTCGTAGGTTTCGTATGGTCCGTACTGCTCCGCCAGTTCGCATG 1630515 Query 78776 ACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT 78835 | ||| | |||||||| | | |||||||| | |||||| | || || || | Sbjct 1630516 AAGATTCCAGAGAGGCGTGGTAGATGACTTCGAAGATTCTCTTGTTCATATCACGGGCTT 1630575 Query 78836 TGGT-CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCG 78894 || || || || | ||| | | ||||||||| | || || ||||| || ||||| Sbjct 1630576 CGGGACTGGTGAAAGGGAAGCGC-ATCATCATGAAAGCGTCCGCAAGGCCTTGAACGCCA 1630634 Query 78895 ATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG---TCGGGTAAAAG 78951 || | || || ||||| ||||| ||| | || || |||||| ||||||| || Sbjct 1630635 ATTCCAATAGGACGGTGACGCATATTGGACGTT---GCGGCCTCGAGAATCGGGTAGTAG 1630691 Query 78952 TTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTG 79011 || | ||||| | ||| ||||| || |||||||| || | | | | | || Sbjct 1630692 TTGCCGTCGATAATCTTGTTAAGGTTGCGAGTGACGACTTTGGTGATCGCATGGAGCTTC 1630751 Query 79012 GCGAAATCAAAATGATT-TCCT--TTGATGAAAGTCGGTAGGCAC-AGCGATGCCAGGTT 79067 | | || || || |||| |||| ||| | | | || | | ||| |||| ||| Sbjct 1630752 TCATAGTCGAAGGTCTTGTCCTCCTTGACGAA-GCGGTTCAGCGCGATCGAAGCCAAGTT 1630810 Query 79068 GCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGA 79127 ||||||||| || ||||| || || | ||| || ||||||| ||||| | Sbjct 1630811 GCACACGGCGACTTCTTCCGGCGACGAGTACTGAACGATCTCGGTGCACAGGTTAGAGCA 1630870 Query 79128 CTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACAT 79187 ||||||||| || | ||||| |||||| ||| ||| ||||||||||||||| ||| Sbjct 1630871 CTTGATGGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAGAGCAT 1630930 Query 79188 GTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCG 79247 ||| || || || || || | ||| ||| || | ||||||| | || ||| Sbjct 1630931 GTAAGGAGTTCCAGTTTCGATCTGCGAGGTGACAATCTCTTCCCAGAGAGCACGAGCCTT 1630990 Query 79248 GACAACCTTCTTGTACCGACCCTG-TGCGACGTAC-----------------------GT 79283 ||| ||||||||| || |||| ||| ||||| || Sbjct 1630991 GACGCGCTTCTTGTAGCGTCCCTCCTGCT-CGTACCTATAAAGAAACAATGACTTCGAGT 1631049 Query 79284 CCGG---------TACA-ACTCGTTGAA-AGCCT-----------CCCCATAGACATCGG 79321 | | ||| ||| | || | ||| | | || ||| || | Sbjct 1631050 CTTGATATAGCTATACTTACTGGGTGTAGAGCTTTTCAAACTCTTCTCCGTAGGTGTCAG 1631109 Query 79322 GCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCT 79381 |||| |||||||||| ||| || ||||||| | ||| |||| || | || || | Sbjct 1631110 GCAGTCCCGGGCACTTGTGGGGACACATCAAGGACCATTCCTTATCATCCTTGACACGTT 1631169 Query 79382 CCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGT 79441 ||||||| ||||| || ||||||||| | ||| ||||| ||| ||| |||||| Sbjct 1631170 CCATGAACAGGTCAGGAATCCACAGGCCATAGAAAAGGTCACGGGCGCGCTCTTCCTCGG 1631229 Query 79442 CGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGAT 79501 || ||| | ||| || || || | ||| ||||||||||||||||| | | Sbjct 1631230 ATCCGGTGTTGCGCTTCAGGCGCAGGAACTCGAAGATATCGGCGTGCCACGGCTCAACGT 1631289 Query 79502 AGATGGCGAACGAACC--------------------CTT--------------------G 79521 ||||||| |||| ||| ||| | Sbjct 1631290 AGATGGCAAACGCACCAGGACGCTAAAATGGGGAAGCTTAGGATAAGTAGAGGTGTATGG 1631349 Query 79522 CG-------CTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAG 79574 || |||| || ||||| | ||||| || |||||||||||| | || ||||| Sbjct 1631350 CGAACATACCTTGTTTCCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAG 1631409 Query 79575 CATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGAT--TCGTGTACCGCTCGCC 79632 |||||| | | |||| || | |||||| || || ||| |||| | ||| || Sbjct 1631410 CATGGGGATCAGACCGTTGGAGGTGCCGTTGGTACCTGCGATCATCGT-TCCCGAG-GCA 1631467 Query 79633 CGAATGTTC-GAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTC 79691 || ||| |||| || | ||||||||| |||| |||| ||||| | ||||||| Sbjct 1631468 CGGATGCAGTGAGC-GTTAAGTCCGATGCCTCCGGCGGACTTAGAGATCAGGGCGCACTG 1631526 Query 79692 CTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 | || |||| | ||||||| ||||| |||||||| | ||| | | |||||||| Sbjct 1631527 CCACAGGGTCTTGAAGATGCCGTCGATGGAGTCGTCGTGCATCGTCAGGAGGAAGCA--- 1631583 Query 79752 CGA---CATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 ||| |||||| || ||| || ||||||||||||||||| |||| ||||||||| || Sbjct 1631584 CGAACTCATCTGGGGCTTGCAGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAA 1631643 Score = 100 bits (110), Expect = 3e-16 Identities = 217/317 (68%), Gaps = 17/317 (5%) Strand=Plus/Minus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATG---TCG 19252 || ||||||||| |||| ||||| ||||||||||| || ||| || |||||| ||| Sbjct 1631643 TTTACGCACGCGTCGCCTACCCTCTTCAACGCCGGAACCTGCAAGCCCCAGATGAGTTCG 1631584 Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 || ||||| || | ||| | || ||| ||| || ||||||| | |||| || | Sbjct 1631583 ---TGCTTCCTCCTGACGATGCACGACGACTCCATCGACGGCATCTTCAAGACCCTGTGG 1631527 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAAT--ATCC 19370 ||||||| | ||||| |||| |||| || ||||| | || |||| | | |||| Sbjct 1631526 CAGTGCGCCCTGATCTCTAAGTCCGCCGGAGGCATCGGACTTAAC-GCTC-ACTGCATCC 1631469 Query 19371 GGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGC 19430 | | || || ||| || || ||||| || ||||| | |||| |||| Sbjct 1631468 GTGCCTCGGGAACGATGATCGCAGGTACCAACGGCACCTCCAACGGTCTGATCCCCATGC 1631409 Query 19431 TCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCT 19490 |||| || | |||||||||||| | ||||| | ||||| || ||| ||||| | Sbjct 1631408 TCCGTGTGTACAACAACACGGCTCGCTACGTTGATCAGGGAGG----AAA--CAAGGTAT 1631355 Query 19491 CGTTCGCCATCTACCTC 19507 ||||||||| ||||| Sbjct 1631354 -GTTCGCCATACACCTC 1631339 >seq964 Length=244507 Score = 93.3 bits (102), Expect = 5e-14 Identities = 303/464 (65%), Gaps = 9/464 (2%) Strand=Plus/Minus Query 59661 TGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCG 59720 ||| |||| || || |||||||||| ||||| | || ||||| |||||||| Sbjct 34412 TGGAACAATCTGAACGCCGACGAGCAGTTCTTCATTTCGCGTGTGCTGGCGTTCTTCGCC 34353 Query 59721 GCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATT 59780 || ||||||||||| | ||||| | | | | ||| || |||| ||| |||| Sbjct 34352 GCTTCGGATGGAATTGTCAATGAAAACCTCGTCGAGCGCTTCACCCAGGAGGTCAAGATG 34293 Query 59781 GCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACG 59840 |||| || | || || ||| | ||| | ||| ||||||||||||| | Sbjct 34292 CCCGAAGCACTCTCCTTTTACAGCTTCCAGATGGCGGTAGAGGGCATCCACTCCGAGATG 34233 Query 59841 TACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA--AGGCTGGTCTGTTCC 59898 ||||| |||||||| | |||| || || ||||| | || ||| || Sbjct 34232 TACTCCAAAATGATCGAAGCTTACGTCATCGACCCCAAAGAGCGCAACATGCTCT--TCA 34175 Query 59899 GTGCCATAGA-GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT- 59956 ||| | | || ||||| ||| | || | || || || ||||| | | ||||| Sbjct 34174 ACGCCCTGCAAGAGTTCCCCTGCA-TCAAGAAGAAGGCCGATTGGGCGCTCCGCTGGATC 34116 Query 59957 -GAGTCCTGGA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATC 60014 | | | | | || || || | | ||| |||| || || || ||| ||||| || Sbjct 34115 GGCGACAAGAACGCTTCCTTCGGAACTCGTGTCATCGCGTTCGCCGCCGTTGAAGGCATT 34056 Query 60015 TTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGC 60074 || ||||| || || ||| ||| || ||||||||||| |||||||| || ||||| || Sbjct 34055 TTTTTCTCGGGTTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGTGGACTGATGCCTGGA 33996 Query 60075 CTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 || | | ||||||||||| ||||| ||||| || || || Sbjct 33995 CTCACCCACAGTAACGAGCTGATCTCCCGAGACGAAGGACTTCA 33952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548514090053280