Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq893 123 3e-23 seq858 98.7 1e-15 seq196 98.7 1e-15 seq1448 93.3 5e-14 seq1443 87.8 2e-12 >seq893 Length=1694367 Score = 123 bits (136), Expect = 3e-23 Identities = 243/357 (68%), Gaps = 3/357 (1%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||| || || || || || ||||| || ||||| || ||||||||| | Sbjct 1630351 GGCGTGCGCAACAGTCTTCTGGTCGCACCGATGCCCACAGCGTCCACCGCTCAGATCCTC 1630292 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| || | ||||||||||| ||||||| ||| ||||| ||| | Sbjct 1630291 GGCAACAACGAGTCGATTGAGCCGTACACCTCCAACATTTACAGTCGCCGCGTCCTCTCC 1630232 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 ||||| ||| || |||| || || | || || ||| || | ||| |||| Sbjct 1630231 GGTGACTTTCAGATCGTCAATCCTCATCTGCTGAAAGATCTGGTTGAGCTGAACCTGTGG 1630172 Query 55658 AACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCA--GAATC-TGGAG 55714 || || |||||| || || | ||| || || ||| |||| | ||| || Sbjct 1630171 GACGACAAGCTCAAGAACGAGATCATCTCGAAGGGCGGATCCATCCAAGGTATCGCCGAC 1630112 Query 55715 ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 ||||| | ||| |||| | ||| ||| || ||||| ||| | |||||| | Sbjct 1630111 ATTCCCAAGGATCTTCAGGACTTGTACAAGACAGTTTGGGAAATTTCGCAGAAGGACATC 1630052 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 || || ||| || || || || || |||||||||||||| ||||| ||||||||| Sbjct 1630051 ATGGAGATGGCGGCCGACCGCGGCGCCTACATCGACCAGTCGCAGTCGCTGAACATC 1629995 Score = 105 bits (116), Expect = 7e-18 Identities = 195/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG---TCG 53329 ||||||||||| |||| ||||| |||||||| || || | || |||||| ||| Sbjct 1631643 TTTACGCACGCGTCGCCTACCCTCTTCAACGCCGGAACCTGCAAGCCCCAGATGAGTTCG 1631584 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||| || ||||| | || ||||| ||||||||||||| | |||| || | Sbjct 1631583 ---TGCTTCCTCCTGACGATGCACGACGACTCCATCGACGGCATCTTCAAGACCCTGTGG 1631527 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTC-GAACGTCCG 53448 |||| |||| ||||| |||| | || || ||||| | || |||| | |||| Sbjct 1631526 CAGTGCGCCCTGATCTCTAAGTCCGCCGGAGGCATCGGACTTAAC-GCTCACTGCATCCG 1631468 Query 53449 TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCT 53508 ||| || || ||| || || |||||| | || | || | | || ||||| Sbjct 1631467 TGCCTCGGGAACGATGATCGCAGGTACCAACGGCACCTCCAACGGTCTGATCCCCATGCT 1631408 Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| || | |||||||||||| || ||||| | ||||| || Sbjct 1631407 CCGTGTGTACAACAACACGGCTCGCTACGTTGATCAGGGAGG 1631366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 |||| ||||||||| | ||||||||||||||||| || | ||||| || ||| | Sbjct 1631301 CGTTTGCCATCTACGTTGAGCCGTGGCACGCCGATATCTTCGAGTTCCTGCGCCTGAAGC 1631242 Query 53628 TGAAT-CAGGGT--GACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 || | || | || |||||| |||| ||||||||| || || || ||||||||| Sbjct 1631241 GCAACACCGGATCCGAGGAAGAGC-GCGC--CCGTGACCTTTTCTATGGC-CTGTGGATT 1631186 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| || || || | || |||| |||| | ||||||| || || Sbjct 1631185 CCTGACCTGTTCATGGAACGTGTCAAGGATGATAAGGAATGGTCCTTGATGTGTCCCCAC 1631126 Query 53744 GAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 ||||||| || || | | |||||| || |||||| Sbjct 1631125 AAGTGCCCGGGACTGCCTGACACCTACGGAGAAGAGTTT 1631087 >seq858 Length=420805 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || |||| ||| || | |||||||| || ||||||||||| ||||| Sbjct 418908 GTGAAAATATAACGGGCGCTAGCGGAGTCCTTGCCGCCCTGGAGCCGCGTTCCGAACTGA 418849 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||| || ||||||| |||||||| ||| ||| | | ||| ||||| |||||| Sbjct 418848 CCGATGGGGAGCAGAAGGTTGATGTTGTTGGAGCCGACGTAGTCCTGGGCCAAGTTCACA 418789 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || | ||| | ||| |||||||| ||||| | | ||| | | | || Sbjct 418788 ATGGTCATCATCAGCGACTGTTCGCCGTGGTGGTACGCGGACATCTCTCCCACGGCACCG 418729 Query 152209 GCCAACTGCGCCACCTT 152225 |||| |||||||||||| Sbjct 418728 GCCAGCTGCGCCACCTT 418712 >seq196 Length=1970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || |||| ||| || | |||||||| || ||||||||||| ||||| Sbjct 816 GTGAAAATATAACGGGCGCTAGCGGAGTCCTTGCCGCCCTGGAGCCGCGTTCCGAACTGA 875 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||| || ||||||| |||||||| ||| ||| | | ||| ||||| |||||| Sbjct 876 CCGATGGGGAGCAGAAGGTTGATGTTGTTGGAGCCGACGTAGTCCTGGGCCAAGTTCACA 935 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || | ||| | ||| |||||||| ||||| | | ||| | | | || Sbjct 936 ATGGTCATCATCAGCGACTGTTCGCCGTGGTGGTACGCGGACATCTCTCCCACGGCACCG 995 Query 152209 GCCAACTGCGCCACCTT 152225 |||| |||||||||||| Sbjct 996 GCCAGCTGCGCCACCTT 1012 >seq1448 Length=718282 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 117350 CGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTT 117409 ||||||||||| || || |||||| | ||| |||||||| || | ||||| |||| Sbjct 374138 CGCGTACCGAACTGGCCGATCGGCTGGAGGAGATTCAGGTTATTCGACCCCACGAAGTCC 374197 Query 117410 TGAGCCAAGTTGACAATCGT----ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGT 117465 || |||||| || ||||| ||| || || || || ||||| || || | Sbjct 374198 TGCGCCAAGCGAACGATCGTGTTCACCAGCGATTCT----TCGCCGTGGTGGTAGGCGGA 374253 Query 117466 CTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCA--TGTCTGACGTCAGGTTCTTC 117523 || ||||||| || ||||||||| |||||||| | || | |||||| | Sbjct 374254 GATCTGCGCCACGGCTCCAGCCAGCTGATTCACCTTCACTTCGCTTCCTTCAGGT--CGC 374311 Query 117524 TTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG 117583 |||| ||| || | | ||||| ||||||||||| |||| ||||| ||| || ||| Sbjct 374312 TTGAAGCACGCGAAGAGGACCTTCCGCTGACTTGGTTTCATGCCATCGACCAGGTTTGGG 374371 Query 117584 ATCGA 117588 ||||| Sbjct 374372 ATCGA 374376 >seq1443 Length=914762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | || || | ||||| || || ||||| ||||||||||| Sbjct 365652 GTGAAAATGTAACGGGGACTAGCTGAGTCCTTTCCTCCCTGGAGACGTGTACCGAATTGA 365711 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | ||| || ||||| | |||||| | ||| || ||| || |||||||| ||| Sbjct 365712 CCAATGGGCAGCAGAAGGTTGATGTTGTTAGAGCCGACGTAGTCCTGGGCCAAGTTCACA 365771 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || | || || || ||| || ||||| || || | | ||| | || | Sbjct 365772 ATGGTCATCATTAAAGACT--GCTCGCCGTGGTGGTAAGCGGACATCTCGCCGACCGCAC 365829 Query 117483 CCGCCAGCTGAGCCACCTTCA 117503 | |||||||| |||||||||| Sbjct 365830 CGGCCAGCTGCGCCACCTTCA 365850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547205315607600