Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq652 141 8e-29 seq1419 127 2e-24 seq1526 116 3e-21 >seq652 Length=32697 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| || |||||| | || || ||||| || ||| || Sbjct 6661 CATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAAGGTTC 6720 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||||||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 6721 TGACTCGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCA 6780 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || ||| | ||| | ||| ||||| Sbjct 6781 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTACAA 6840 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | |||||||||||||| | || ||||| || Sbjct 6841 CATCCAGAAGGAGTCCACGCTTCATTTGGTTTTGCGCCTTCGCGGTGGAAT 6891 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | || || ||||| || ||| || Sbjct 6434 ATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAAGGTTCT 6493 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 6494 GACTCGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 6553 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| | ||| | ||| |||||| Sbjct 6554 CAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACTCTCAACGACTACAAC 6613 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | || | ||| | || || ||||| Sbjct 6614 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTTCGTCTTCGTGGAGGCAT 6663 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | |||||| | ||||| ||| |||| Sbjct 6890 ATGCAGATCTTTGTGAAGACCCTTACTGGAAAGACGATTACTTTGGAAGTCGAAGGGTCC 6949 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| |||| || || || ||||||||||| || ||||| || || ||||| Sbjct 6950 GATTCGATCGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCAG 7009 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || | ||| | ||| |||||| Sbjct 7010 CAGCGACTTATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCAACGACTACAAC 7069 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| || || ||| | ||| | ||| | || ||||| Sbjct 7070 ATCCAGAAGGAGTCAACTTTGCATCTCGTTCTCCGTCTTCGTGGTGG 7116 >seq1419 Length=601844 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||| ||| | || || || || || || || Sbjct 538934 CATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAGGTCGAGGGATC 538993 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || ||| || || || ||||| ||||| || || |||||||| Sbjct 538994 TGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGATCA 539053 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | |||||| | ||| | ||| ||||| Sbjct 539054 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGTACCCTCAGCGACTACAA 539113 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || |||||||||||| | || | ||| | ||| | || ||||||| Sbjct 539114 CATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTTCGTGGTGGCA 539163 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || |||||||| || ||| | || |||||||| || || ||| Sbjct 538431 CATGCAGATCTTCGTGAAGACTCTGACAGGAAAGACGATCACTCTTGAGGTCGAGGGGTC 538490 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || ||||| || || ||||| || || || || Sbjct 538491 TGACACCATCGAGAACGTGAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCA 538550 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | |||||||| || |||||||| | || | ||| ||||| Sbjct 538551 GCAGCGATTGATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACTCTCAGCGACTACAA 538610 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || ||||| | ||| | || || ||||| Sbjct 538611 CATACAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGTGGAGGCAT 538661 >seq1526 Length=386723 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||| ||| | || || || ||||| || | || Sbjct 246309 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTAGAAGTCGAGGCTTCG 246250 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| || || || ||||| ||||| || || ||||| || Sbjct 246249 GACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAG 246190 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| | ||| | ||| |||||| Sbjct 246189 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGAAGGACTCTCAGCGACTACAAC 246130 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || || | ||| |||| | ||| | || ||||||| Sbjct 246129 ATCCAGAAGGAATCCACGCTCCATCTGGTCCTCCGTCTCCGTGGTGGCA 246081 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||||||||| ||| | || || || ||||| || |||| Sbjct 246538 CATGCAAATCTTCGTGAAGACTCTGACCGGAAAGACGATCACCCTGGAAGTCGAGGCGTC 246479 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| ||||| || || || || || Sbjct 246478 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 246419 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| ||| | |||||| | ||| | ||| ||||| Sbjct 246418 GCAGCGCCTTATCTTCGCTGGCAAGCAACTCGAAGACGGCCGTACCCTCAGCGACTACAA 246359 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || | ||| |||| | ||| | || || || || Sbjct 246358 CATCCAGAAGGAATCCACTCTCCATCTGGTCCTCCGTCTCCGTGGAGGAAT 246308 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || |||||||||||||| ||| | || || || ||||| || | || Sbjct 247611 CATGCAAATCTTCGTGAAAACTCTGACCGGAAAGACGATCACCCTGGAAGTCGAGGCTTC 247552 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| ||||| || ||||| ||||| ||||| || || ||||| || Sbjct 247551 GGACACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCCGACCA 247492 Query 27107 ACAGCGTTTAATATACGCCGGCAA 27130 |||||| | || | ||||| || Sbjct 247491 GCAGCGTCTTATCTTTGCCGGTAA 247468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909908218240