Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq988 89.7 3e-13 seq1347 87.8 1e-12 >seq988 Length=203328 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||||||||||| ||||||||||| ||||| || || || | Sbjct 72452 AATGCAGATTTTCGTCAAAACCCTCACGGGTAAAACGATCACCCTCGAGGTCGAAGCCTC 72393 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || || ||| ||||| ||||| | || || || || Sbjct 72392 CGACACCATCGAAAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCTGACCA 72333 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 || ||| | || || ||||| || Sbjct 72332 GCAACGTCTCATCTTCGCCGGTAA 72309 >seq1347 Length=405773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||||| ||||| ||||||||||| ||||| || || || | Sbjct 393270 AATGCAGATTTTCGTCAAAACCCTGACGGGTAAAACGATCACCCTCGAGGTGGAAGCCTC 393211 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||| | | || ||| |||| | || ||| ||||| || || | ||||| || | Sbjct 393210 GGACTCGATCGAGAATGTTAAGGC-GAAGATTCAGGACAAGGAGGGCATCCCGCCCGACC 393152 Query 23729 AACAGCGTTTAATATTTGCCGGCAA 23753 |||| || | || || ||||| || Sbjct 393151 AACAACGACTGATCTTCGCCGGTAA 393127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003165353496