Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_031021.1 Length=41224 Score E Sequences producing significant alignments: (Bits) Value seq31 553 4e-153 >seq31 Length=5916 Score = 553 bits (612), Expect = 4e-153 Identities = 910/1295 (70%), Gaps = 48/1295 (4%) Strand=Plus/Plus Query 20983 GAATACCAGAAAATAATGACGTCGTTTATGCTACAGCACCCACGTTGCAATATATGGTGC 21042 ||||| || ||| |||||||| | |||||| | |||||||| |||||| | ||| || Sbjct 3209 GAATATCAAAAACTAATGACGCGGCATATGCTGCGTCACCCACGCTGCAATGTGTGG-GC 3267 Query 21043 GGTA-TGGGTGGCGGCAAGTCGGGGGCAACGTTGTGGGTCCTCAACCGACTGTTCC---- 21097 | | |||| ||||||| | ||||| || ||||| || ||||| ||||||| Sbjct 3268 GACAATGGGCTCCGGCAAGACCGGGGCCACCATGTGGACGCTGAACCGCCTGTTCCAATC 3327 Query 21098 ---------GTAA---TGGGC------AACTTAATGAC-GACGACCGAGTGTTAATTCTG 21138 | || |||| |||| | ||| | ||| || ||| | || ||| Sbjct 3328 CTCAAAGCTGGAAGATTGGGACCCGGTAACTCA--GACCGGCGATCGGGTGCTTATCCTG 3385 Query 21139 GCCCCTTTACGTGTTGCGTCAGGTACGTGGCCGGCAGAACAAGAGAAATGGAACTTCCCG 21198 || || | || ||||| ||||| || |||||||| ||||| | ||| ||| | ||||| Sbjct 3386 GCGCCGCTGCGCGTTGCATCAGGCACCTGGCCGGCCGAACAGGTGAAGTGGGATTTCCCA 3445 Query 21199 TGTCTGAGTGTAGTAGATGCAACTGGTTCTGAGAAGC-GAC-GCATCGCGGCGCTGGAGT 21256 || ||| | || || || | || || | ||| || ||| || | ||||||||| | Sbjct 3446 TGCCTGCGCGTCGTGGACGGCACCGG--CAAAGAGGCCGACCGCCTGGCGGCGCTGAAC- 3502 Query 21257 CAGACGCT---AACGTGGTATGCACTAACTACGAGGTTATCGAATGGCTTATTGACTACT 21313 |||| | |||||||| ||| |||||| ||||| ||||| ||| | | | ||| | Sbjct 3503 --GACGATTTCAACGTGGTGTGCGTTAACTATGAGGTGATCGACTGGTTGGTCGGCTATT 3560 Query 21314 ACGGCAAAGACGACTGGCCTTTTACCGTTATAGTTGCCGATGAAAGCACGAAGCTTAAAT 21373 ||||| |||| ||||| || ||||| || |||||||| || ||||||||||||| Sbjct 3561 ACGGC---GACGCGTGGCCATTCACCGTCATTGTTGCCGACGAGTCGACGAAGCTTAAAT 3617 Query 21374 CGTTCCGCAGCCGTTCGGGCGGGAGCAAACGGGCAAGGGCGCTTAGCAAGGTTGCGTTCG 21433 ||||||||||| || ||||| ||||| || || | | | || || || || ||||||| Sbjct 3618 CGTTCCGCAGCAAATCCGGCGGTAGCAAGCGCGCGAAGACACTCAGTAAAGTAGCGTTCG 3677 Query 21434 GTAAGGTTAAGCGTTTCATTAACCTTACCGGGACACCATCGCCAAACGGCTTAAAAGATT 21493 ||||||| ||||| || || || || ||||| || ||||| || |||||| | |||||| Sbjct 3678 GTAAGGTGAAGCGCTTTATCAATCTGACCGGTACGCCATCACCGAACGGCCTCAAAGATC 3737 Query 21494 TGTGGGGTCAGAACTGGTTTATCGACGCAGGTGAGCGCCTTGGTTCTTCGTACACCGCAT 21553 ||||||||||||||||||| |||| || || ||||| || || || ||||| || | Sbjct 3738 TGTGGGGTCAGAACTGGTTCGTCGATGCCGGCGAGCGTCTCGGCAGCTCTTACACTGCTT 3797 Query 21554 TCACCGACCGCTGGTTTAATTCAGTACAGAAAGGAAAGTCGGCGATG--GCACGGGAGTA 21611 ||||||| |||||||| | || || ||||||||| | || | | || || || || Sbjct 3798 TCACCGATCGCTGGTTCACCTCGGTGCAGAAAGGAGA-TCATT-ACGCCGCCCGCGAATA 3855 Query 21612 CCACGCCCGCCCCGGCGCGGATAACGAGATTCACCAGAAGATGAAGGATATCAGCCTGAC 21671 | |||||| ||| || || | |||||| |||||||| |||| || |||| ||||| Sbjct 3856 CGCGCCCCGCCGCGGTGCCGACACCGAGATCCACCAGAAACTGAAAGACGTCAGTCTGAC 3915 Query 21672 CATTGATGCTGCCGAGTGGTTCGGTTGTGAAGCGCCGGTTATCGTACCGGTTGAGATTGA 21731 | | || || ||||||| || || ||||| ||| || |||| ||||| | | || Sbjct 3916 CGTGGACGCGGCCGAGTTCTTTGGCTGTGACAAGCCTGTCGTCGTCCCGGTCGTCGTCGA 3975 Query 21732 CCTGCCTAAGAAAGCACGCCAGGCTTACATCGATATGGAGGAGAAGTTATTCGCGGAGCT 21791 |||| || || ||| |||| |||| || |||||||| || ||||||| || || Sbjct 3976 TATGCCACCAAAGGCGCGCAAGGCGTACAAGGAAATGGAGGAACAGCTATTCGCCGAACT 4035 Query 21792 AGAAAGCGGAGAAGTCGAAGCGGCTAATGCCGCTGCTAAAACGTCGAAATGCCTCCAGAT 21851 || ||||| || ||||||||||| || || || || || | |||||||| ||||| Sbjct 4036 GGATAGCGGCGAGGTCGAAGCGGCCAACGCGGCGGCCCGTACCGCCAAATGCCTGCAGAT 4095 Query 21852 TGCCTCCGGTGCTGTATACGTATCAGGGCCAGATGGCGAAGCAACCAAAGACTGGGAGAA 21911 ||| ||| || || || || | || ||| ||||| | | || |||| ||| Sbjct 4096 CGCCAGCGGGGCGGTGTATGTGACCGGCGAAGACGGCGAGCGGTCTACCGAGTGGGCGAA 4155 Query 21912 AGTGCACGACACGAAACTGGACGCACTGGAGTCAATTGTGGAGGAGTTGCAGGGCGCGCC 21971 ||||||||| |||| |||||||| |||||||| ||| | || |||||| ||||| || Sbjct 4156 GGTGCACGACGCGAAGCTGGACGCCCTGGAGTCGATTATCGACGAGTTGTCCGGCGCCCC 4215 Query 21972 GTTGCTGGTGGCGTATCAGTTTAAGCACGAACTTGAGCGCATTCTTAAGCGTTTCCCACA 22031 | || ||||||| ||||||| |||||||| || | |||||| | || || ||||| || Sbjct 4216 GCTGTTGGTGGCCTATCAGTACAAGCACGACCTGGCGCGCATCTTGAAACGGTTCCCGCA 4275 Query 22032 GGCGCAGGCGTTCGCCAAAGGTGCCAAGGGCAATAAGCAGATGGAAGCG-TGGAACCGCG 22090 |||||||| |||| || || || || || ||| | | |||| |||||| | Sbjct 4276 GGCGCAGGAGTTCAAAAAGGGCGCTGCCGGTAACCGCCAGGTTG-AGCGCTGGAACAAAG 4334 Query 22091 GAGAGATACCTATGCTCCTG-ATACACCCAGCCTCCGCGGGTCACGGGCTGTCGCTACAA 22149 | |||| | | || || | ||||| || |||||||| ||||| || | || Sbjct 4335 GTCAGAT-CGAAATCTTGTGCGTTCACCCGGCGTCCGCGGGCCACGGCCTCAACATGCAG 4393 Query 22150 CACGGCGGGCACCACATGGCCTTTATGAGTCAGGGGTGGAACCTGGAACATTATCTGCAG 22209 | |||||||||||| |||| ||| | || | |||||| | || || || |||| Sbjct 4394 GATGGCGGGCACCACCTGGCATTTTTCAGCGACACATGGAACTTTGAGCACTACGCGCAG 4453 Query 22210 GTTATCGAGCGCATAGGTCCGGTAAGGCAGATGCA 22244 | | ||||| || |||||||| | |||||||| Sbjct 4454 ATCGTGGAGCGTATCGGTCCGGTGCGCCAGATGCA 4488 Score = 399 bits (442), Expect = 6e-107 Identities = 701/1017 (69%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 17285 CTCGATACTGAAACATTCTCAGAAGCCGATTTGAAAAAAGTCGGTTCCTATGCCTATGCC 17344 |||||||| || || | || |||||||| ||||||||| ||| ||||||| ||||| Sbjct 172 CTCGATACCGAGACGTATTCCGAAGCCGACTTGAAAAAATGCGGCGCCTATGCGTATGCG 231 Query 17345 GAACATCCGACTACTGAAATTGTTATCTGCACTTATGCTTTCGATGAAGGCCCCGTGCAA 17404 ||||| | |||| ||||| | ||||||| || || ||||| || | ||||| Sbjct 232 GAACACCTATCTACCGAAATCATGATCTGCAGCTACGCGTTCGACGATGAAAAGGTGCAG 291 Query 17405 GTATGGGACGCCACCGACGGCAGCGATATGCCGAGAGATTTGCGCAGGGCGATGCTAAAG 17464 |||||||||||||||||||||||| |||||| | || || | ||| ||| | Sbjct 292 GTATGGGACGCCACCGACGGCAGCCGCATGCCGCGCGACCTGAAACGTGCGCTGCGCGAA 351 Query 17465 CTGCAAAAACCAGACAGCAACCTCAAACTGGTAGGCCAAAACTTCCTTATGTTCGACCGA 17524 ||| | || || | | | | ||||||| || ||| ||| |||||||||| Sbjct 352 CTGGCGAGGCCCGATACCGAAAGCCGACTGGTAATGCAGAACGGCCTGCTGTTCGACCGG 411 Query 17525 CCAGTTATTAAGCATTGCTGGGGATTCGAACTCCTGGTAGAAAACATTATAGACACTATG 17584 | | || | |||||||| | ||| ||| | | || || |||||| ||| Sbjct 412 CTGCTGATGCGAGAATGCTGGGGCTACGATATCCCGCCGGCCAATATCGAAGACACCATG 471 Query 17585 ATAGTCGCGTTCCGACATGCCCTCCCGGGTTCACTGGCCGCGCTGTGTGAGGTTTTAAAC 17644 || | |||||||| || || || |||||| |||| || || || || || | Sbjct 472 ATCATGGCGTTCCGCCACGCGCTGCCGGGTAGCCTGGATGCACTATGCACCGTGCTAGGC 531 Query 17645 ATTGACGCAAGCATG--GCTAAGGATAAACGCGGCAAGGCGCTCATACAGCGGTTCAGTA 17702 | || | |||| || ||||| || ||||||||||| || | || ||| ||| Sbjct 532 GTCGATG--AGCAGAACGCCAAGGACAAGGCGGGCAAGGCGCTGATCAACCGCTTCTGTA 589 Query 17703 AGCCTACGCCTAAGAACTATAAGATTCGACGATATACCGCCAATACCCACCCAAAAGAGT 17762 |||||||||||||| || ||| | || || || || ||| ||| ||||| | |||| Sbjct 590 AGCCTACGCCTAAGTCGTACAAGGTGCGCCGCTACACGGCCGCTACGCACCCCGACGAGT 649 Query 17763 GGGCAGAATTTATCGCATACGCAAAAAGCGACATTACGTCTATGCGTGAAGTGTATAAGA 17822 |||| |||| ||| ||||| |||||||| ||| ||||| || |||||| | Sbjct 650 GGGCCAAATTCATCAAGTACGCCCGCAGCGACATCCTGTCCATGCGCGAGGTGTATTACC 709 Query 17823 AAATGCCGAAGTGGGGGAATTCTGAGTTCGAAGACCGCGTGCTGTGGTTAGACCAAGTAA 17882 || |||| ||||| || | ||| || || | ||| | ||||| | | Sbjct 710 GCATCCCGACCTGGGGCAACACCGAGAAGGAGAACGAAATCCTGGTACTTGACCAGCTGA 769 Query 17883 TTAACGACCGCGGATTTAAGGTTGACGTTGCCCTCGCTGAGGCCGCGATTGAAGCAGTGA 17942 | ||||||||||| || || ||||| | | | || |||| ||||| || || |||| Sbjct 770 TCAACGACCGCGGCTTCTGTGTGGACGTCGACTTGGCCAAGGCAGCGATCGAGGCCGTGA 829 Query 17943 CGCGCCACAAGGAAGAGCTACAGGAAGAAGCC--CAACGCAAATACGGCGGTTCACTAAC 18000 ||||||||||| ||||||| |||| || ||| ||| | | |||||| | || || Sbjct 830 CGCGCCACAAGCAAGAGCTGCAGGCTGAGGCCACCAAGG--AGTACGGCAGCGGCCTGAC 887 Query 18001 CGGCAAAGACTTCTTGCCTATTTTACAGGAACTGGCGCCGGCGCACCGCATTCACAACGC 18060 ||| |||| |||| | | | || |||||||||||||| || | ||||| Sbjct 888 CGGGGCCTCCTTCCTGCCGACGCTGCGCGACCTGGCGCCGGCGCATGAAATCCCGAACGC 947 Query 18061 ACAGAAGTCAACACTAAACGATTTGCTGGCGGATGAGGATTTACCGGACGACGCCCGCAC 18120 ||||| || || |||||||| ||||||| || || | |||||||| || ||| Sbjct 948 GCAGAAATCGACGCTAAACGACCTGCTGGCCGACCCCGACCTGCCGGACGAGGCGCGCGA 1007 Query 18121 TATTATCGAGATGCGTCTCGGGGCTGCTTCTACTGCATCGACGAAATACGCGCCGTTGCT 18180 | ||||| ||||| || || || || || || |||||||| |||||||| ||| |||| Sbjct 1008 GCTGATCGAAATGCGCCTGGGCGCGGCGTCCACCGCATCGACAAAATACGCTCCGCTGCT 1067 Query 18181 GTTAGGCCGTTCTTCAGATGACCGCCGCCGTGGTTGCCTGCAATACGGAGGAGCGAAGCG 18240 | | |||| || || | |||||||| || |||||||| |||||||| || || || Sbjct 1068 GCTCGGCCTGTCGCGCGACGGGCGCCGCCGCGGGTGCCTGCAGTACGGAGGGGCTAAACG 1127 Query 18241 AACACTGCGATGGGCCGGGAAAGGTTTTCAGCCGCAAAACCTGGCGCGCGGGTATTA 18297 || ||||| |||||||| ||||| || |||||||| ||||||||||||||||| || Sbjct 1128 CACGCTGCGCTGGGCCGGTAAAGGCTTCCAGCCGCAGAACCTGGCGCGCGGGTACTA 1184 Score = 107 bits (118), Expect = 5e-19 Identities = 138/189 (73%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 20549 TGGGCGCTCCTGACCTGCTGGTGATTCTCCCCGGTGGCATCATCTGGTTCGTCGAGGTGA 20608 |||| || || || ||||||||| |||| || | ||| || | |||||||||||||||| Sbjct 2567 TGGGTGCCCC-GATCTGCTGGTGCTTCTGCCGAGAGGCGTCGTGTGGTTCGTCGAGGTGA 2625 Query 20609 AGAAAGACGAAAACACGAAGCCAGACCCGCACCAGTTGCGCGAGCACGAGAGGATGCGTA 20668 |||||||||| ||| |||||||||||||| ||||||||||| | |||| | Sbjct 2626 AGAAAGACGAGGCCACCGGCACAGACCCGCACCAGGCACGCGAGCACGAACGCATGCAAA 2685 Query 20669 GACGCGGCGCAAATGTTTTTGTTGTTGGGTCGAAGAAACAGGTTGATAAATTAATAGAAC 20728 |||||||| ||||| ||| || || || |||||||| | |||| | | Sbjct 2686 AGCGCGGCGCCAATGTGTTTACCGTCGGCAGCAAATCGCAGGTTGACAGCCTAATCGCAA 2745 Query 20729 ACTATTATA 20737 ||||||||| Sbjct 2746 ACTATTATA 2754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131792755363784