Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq893 100 4e-16 >seq893 Length=1694367 Score = 100 bits (110), Expect = 4e-16 Identities = 238/359 (66%), Gaps = 3/359 (1%) Strand=Plus/Plus Query 76883 ATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCT 76942 ||| || || | |||||| || || |||| |||||| || |||||| | || || | Sbjct 1629974 ATAGCTCGGCTTGGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCG 1630033 Query 76943 ATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTG 77002 || |||||||| | || ||| ||| || | ||||||||||| || ||| | | | Sbjct 1630034 GTCGGCCGCCATCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTC 1630093 Query 77003 TTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGT 77059 | | ||| | |||| || | || ||| ||||| || || | || || || Sbjct 1630094 CTGAAGATCCTTGGGAATGTCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGATCTC 1630153 Query 77060 ATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATT 77119 ||||| | | || | ||||| ||| ||| | | || | || ||||||||||| Sbjct 1630154 GTTCTTGAGCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGATT 1630213 Query 77120 AACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTC 77179 || || ||||| || || || | || | ||| ||||||| || ||| || || || Sbjct 1630214 GACGATCTGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCTC 1630273 Query 77180 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | || || ||||| || | || ||||| || || || || ||||| ||||| |||| Sbjct 1630274 AATCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCA 1630332 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| || || || | || || || || ||||||||||| || || | || ||| Sbjct 1631606 GTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCAGCGATCCGACATGAGGTTG 1631665 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 || ||||| || |||| || |||||| | ||| || | ||| || ||||||||||| | Sbjct 1631666 TAGGTTTCGATGGCTGCGTCGATGTCCTCCTTG-TGGACTCCCACGGCTACACGCATAAG 1631724 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| ||||| || | || |||| || || |||| |||||| || ||||| Sbjct 1631725 CATGTGCTGCGGACGCTCGGTGATCTTGCCGTTGATCTTCAGCAAGTACGACCGTTCCAG 1631784 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 || || || || |||||| |||| | ||||| Sbjct 1631785 GGTCTTGAACCCGAAATAGGTGTACGCGAAGTC 1631817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694655236591680