Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1419 116 3e-21 seq652 111 1e-19 seq1117 107 2e-18 seq1526 105 6e-18 >seq1419 Length=601844 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || ||||||||| ||||| |||||| Sbjct 538659 GCCTCCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCT 538600 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || | |||||||||||| || |||| ||||| ||||| | ||| Sbjct 538599 GAGAGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGG 538540 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||| || ||| || ||||| | | ||||| | ||| || Sbjct 538539 AATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGAC 538480 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 538479 CTCAAGAGTGATCGTCTTTCCTGTCAGAGTCTTCACGAAGATCTGCATG 538431 Score = 114 bits (126), Expect = 1e-20 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || || ||||||||| ||||| |||||| Sbjct 539162 GCCACCACGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 539103 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| || ||||||||||| ||||| || || ||||| || || | || Sbjct 539102 GAGGGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGG 539043 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTC-GCTCGACTCC 41812 | | ||||||||| || | || |||| ||| | | ||||| | || ||| Sbjct 539042 GATTCCTTCCTTGTCC-TGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGATC-CCTCG 538985 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 538984 ACCTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATG 538934 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || ||| || || ||||| ||||| Sbjct 538203 GCCTCCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCTTTTTGGATGTTGTAGTCACT 538144 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || ||||||||||||||||| || |||| ||||| ||||| | ||| Sbjct 538143 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGG 538084 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||| || ||| || ||||| | | |||||| ||| || Sbjct 538083 AATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGGATCCCTCAAC 538024 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || ||||||||||| ||||| || ||||| Sbjct 538023 CTCCAAGGTAATCGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCAT 537976 >seq652 Length=32697 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || || |||| ||| |||||| ||||||||| ||||| |||||| | Sbjct 6888 CCACCGCGAAGGCGCAAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTG 6829 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||||||||| ||||| || || ||||| || || | || Sbjct 6828 AGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGG 6769 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || |||||||||| ||| || ||| |||| | || | ||| || Sbjct 6768 ATGCCCTCCTTGTCCTGGATCTTGGCCTT----GACGTTCTCAATCGAGTCAGAACCTTC 6713 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || ||||| || ||||| || || ||||||||| Sbjct 6712 GACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACAAAGATCTGCATG 6661 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||||| || ||||||||| ||||| |||||| | Sbjct 7116 CCACCACGAAGACGGAGAACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCGTTG 7057 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || || || ||||| || || | |||| Sbjct 7056 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGGGA 6997 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | ||| | || || | |||| | | | ||| | || || Sbjct 6996 ATGCCCTCCTTGT-CTTGAATCTTGGCCTTAACGTTCTCGATCGAATCGGACCCTTCGAC 6938 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || || || || ||||| || || |||||||| Sbjct 6937 TTCCAAAGTAATCGTCTTTCCAGTAAGGGTCTTCACAAAGATCTGCAT 6890 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||||||||| ||||| |||||| Sbjct 6661 GCCTCCACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGTT 6602 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| |||||||||||||| ||||| || || ||||| || || | || Sbjct 6601 GAGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGG 6542 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 6541 GATGCCCTCCTTGTCCTGGATCTT 6518 >seq1117 Length=604131 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||| |||||| | Sbjct 393889 CCACCACGGAGACGAAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGTTG 393830 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||||||||| ||||| || || ||||| || || | || Sbjct 393829 AGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGG 393770 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCA 41813 | | |||||||||| || |||| || | ||| || | || | || || | Sbjct 393769 ATTCCCTCCTTGTCC-TGGATTTTGGCCTTGACGTTCTCA-ATTGAGTCAGAACCTTCGA 393712 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 393711 CCTCAAGTGTGATGGTCTTGCCCGTAAGAGTCTTGACGAAGATCTGCATG 393662 >seq1526 Length=386723 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||||| |||||| |||||||| ||||| |||||| Sbjct 246082 GCCACCACGGAGACGGAGGACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCT 246141 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || | |||| || ||||||||||| ||||| || || ||||| ||||| | || Sbjct 246142 GAGAGTCCTTCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 246201 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| | | | ||||| | ||| || Sbjct 246202 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGAC 246261 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || ||||| ||||| ||||| |||||||| Sbjct 246262 TTCTAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 246309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294973514400