Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3649 87.8 4e-12 seq3729 84.2 5e-11 >seq3649 Length=5325 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 || || || || || ||| |||||||||||||||||||| | || || | ||||| || Sbjct 2531 CAGGCTTCCACGTCCGAATTGTATGGAAAAGTTCAAGAAGTCCCGCAGAAAGAAACCACC 2472 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT--TTGTA 61206 ||||| ||||| ||| || || | || || || ||||||| |||||||| | || Sbjct 2471 CCGTTCTATCCGCGTTCTCCCTACGCGGTCGCGAAGCTATACGGCTACTGGATCGTGGT- 2413 Query 61207 AAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGT-TTCAATCACGAG 61265 || ||||||||| | || ||||| | || || | || | | ||||| |||||| Sbjct 2412 -TAACTACCGCGAGGCCTACAACATGTTCGCCTGCAA-TGGAATCCTCTTCAACCACGAG 2355 Query 61266 AGTCC 61270 ||||| Sbjct 2354 AGTCC 2350 >seq3729 Length=14609 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 6077 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 6136 Query 165769 CCCC 165772 |||| Sbjct 6137 CCCC 6140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057744929639420