Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5071 113 5e-20 seq5716 86.0 7e-12 >seq5071 Length=368534 Score = 113 bits (124), Expect = 5e-20 Identities = 307/469 (65%), Gaps = 7/469 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| | |||||||| |||| ||||| || || || | ||| | ||||||| Sbjct 135093 ACATGAGGCATGCGAAGTCGCGATGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGT 135152 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 ||||| || ||||| || ||||||||||| | ||| ||||||| || || ||||| | Sbjct 135153 GGGTGAGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTG 135212 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC--- 24303 | |||||||| || || || || || ||||| || | | | ||| | || ||| Sbjct 135213 AGAAGAAAATGCCCTCCACAGCAGCGAAGGCGATCACACGTGTTCC--GAACGACGCGTT 135270 Query 24304 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 ||||| ||||| | ||||| || || |||||||| | || || | | | Sbjct 135271 CTTGTCACCGATCCAACGAAGCGCCCAGTCAGCTTTCTTTTTGATGCATGGGAATTCTTG 135330 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || || ||||| | ||| || ||| | ||| | || || | ||||||| Sbjct 135331 GATGGCGTTGAAGAGCTTGTTCTTCTCACGAGGATCGGTCACGTAGGCCTCAATCATCTT 135390 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 |||||||| || ||||| || | ||| ||||| || | |||||| | || Sbjct 135391 CGAGTACATTTCAGAGTGAATCCCCTCGACGGCGATTTGGAAGCTGTAGAACGAAAGGGC 135450 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 ||| | |||| || ||| | || || || | ||||||||| || || || || Sbjct 135451 CTCCGGCATCTTGACCTCTTGAGTGAAACGATCGATGAGATTTTCATTGACGATGCCATC 135510 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 24590 ||||| || || ||||||||||| || ||| | | ||||||| Sbjct 135511 TGATGCTGCGAAGAATGCCAATACATGCGAGATGAAAAACTGTTCGTCT 135559 >seq5716 Length=132174 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | ||||||||| ||| ||||| ||||||| |||||| | |||||||||| Sbjct 121771 GGGCACATAAGAGACCACTCTTTGTCTTCCTTTACTCGTTCCATAAACAAATCAGGAATC 121712 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || | ||| ||| ||||||| | | | ||| || || |||||||| || || Sbjct 121711 CACAAAGCGTAAAAAAGATCTCGAGCACGTTCTTCTTCTGAGCCGGTATTCTTCTTCAGT 121652 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 || ||| | | ||||| | |||||| ||||| | ||| || | | | | ||||| Sbjct 121651 CTCAGAAACTCGAAGATATCTGCATGCCAAGGTTCGACGTAAATCGCAAAAGCACCAGGA 121592 Query 54176 CG 54177 || Sbjct 121591 CG 121590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593678302852320