Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq616 113 4e-20
seq611 91.5 1e-13
seq5007 82.4 6e-11
>seq616
Length=1528
Score = 113 bits (124), Expect = 4e-20
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| || | ||| | ||||| || || || ||||| |||||||
Sbjct 367 CCTCCGCGGAGTCGGAGGACGAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAA 426
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| || || || |||| || | ||||||||| |||
Sbjct 427 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGG 486
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC--TCCG 21126
| ||||||||||| |||||| ||||| | ||| || | ||| || |||
Sbjct 487 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGT--CCGAGCCTTCCA 544
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||||| ||| || ||||||||||| | ||||||||| || || ||||||
Sbjct 545 CTTCCAAGGTGATCGTCTTGCCGGTGAGCGTTTTGACGAAGATCTGCATT 594
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || |||| || || | ||| | || |||||||| |||||||| ||||| | |
Sbjct 1101 CCTCCGCGAAGCCGAAGGACGAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAC 1160
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || || | ||||| ||||| || || || | || | || ||||||||| ||
Sbjct 1161 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGA 1220
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| ||| || | ||| || ||| | || |
Sbjct 1221 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACT 1280
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||||| ||||| ||||| | ||| ||||| || || |||||
Sbjct 1281 TCAAGAGTAATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 1327
>seq611
Length=17302
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | ||| | ||| |||||||| || ||||| ||||||| ||||| || | |||
Sbjct 9652 AGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 9711
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| || || || | || || | |||||| || ||| | |||||||||||
Sbjct 9712 TCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCC 9771
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | ||| || || | ||| || | ||| ||||||
Sbjct 9772 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACCTCGAGGGTGATGGTC 9831
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||||| || | ||||| || || |||||||||
Sbjct 9832 TTGCCAGTGAGGGTTTTCACGAAGATTTGCATT 9864
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| || ||||| || ||||| ||||||| |||||| | | ||||| ||||| || ||
Sbjct 4422 GTTGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCGAGCTGCTTTCCG 4481
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
|| | || || | ||| ||||| ||| | ||||||||||| |||||| |||
Sbjct 4482 GCGAAGATGAGGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTC 4541
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCG-TTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157
|| | ||| ||| || | || || ||||| ||||||||||||||| || | |||
Sbjct 4542 ACGTTCTCGATAGTGTC-CGATCCTTCGACTTCCAGGGTAATGGTCTTGCCAGTGAGCGT 4600
Query 21158 TTTGACAAATATTTGCAT 21175
|| || || || |||||
Sbjct 4601 CTTCACGAAAATCTGCAT 4618
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || || || | || || | ||| | ||| |||||||| |||||||| |||||||
Sbjct 9231 TCCACCACGAAGACGAAGAACGAGATGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGA 9290
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
|| || || | || |||||||| || || || |||| || | ||||||||| |||
Sbjct 9291 GAGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGG 9350
Query 21068 CACGCCTTCCTTGTCGGCGATCTT 21091
| ||||||||||| ||||||
Sbjct 9351 AATTCCTTCCTTGTCCTGGATCTT 9374
>seq5007
Length=89527
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005
|||||||| ||||| | || || | ||| | || ||||| || |||||||| |||||
Sbjct 22029 TTTCCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCG 22088
Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065
| || || | ||||||| || || || || || | || || | |||||||||
Sbjct 22089 GAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGA 22148
Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125
|| | |||||||||||| |||||| ||||| | ||| ||||| | |||
Sbjct 22149 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCA 22208
Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || || ||||| || || | ||||| ||||| || |||||
Sbjct 22209 ACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCAT 22258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422229176579144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |