Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq616 113 4e-20 seq611 91.5 1e-13 seq5007 82.4 6e-11 >seq616 Length=1528 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||| || || || ||||| ||||||| Sbjct 367 CCTCCGCGGAGTCGGAGGACGAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAA 426 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || || |||| || | ||||||||| ||| Sbjct 427 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGG 486 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC--TCCG 21126 | ||||||||||| |||||| ||||| | ||| || | ||| || ||| Sbjct 487 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGT--CCGAGCCTTCCA 544 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||| || ||||||||||| | ||||||||| || || |||||| Sbjct 545 CTTCCAAGGTGATCGTCTTGCCGGTGAGCGTTTTGACGAAGATCTGCATT 594 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| || || | ||| | || |||||||| |||||||| ||||| | | Sbjct 1101 CCTCCGCGAAGCCGAAGGACGAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAC 1160 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | ||||| ||||| || || || | || | || ||||||||| || Sbjct 1161 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGA 1220 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | ||| || ||| | || | Sbjct 1221 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACT 1280 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||| ||||| | ||| ||||| || || ||||| Sbjct 1281 TCAAGAGTAATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 1327 >seq611 Length=17302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | ||| |||||||| || ||||| ||||||| ||||| || | ||| Sbjct 9652 AGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 9711 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || || | |||||| || ||| | ||||||||||| Sbjct 9712 TCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCC 9771 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | ||| || | ||| |||||| Sbjct 9772 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACCTCGAGGGTGATGGTC 9831 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || | ||||| || || ||||||||| Sbjct 9832 TTGCCAGTGAGGGTTTTCACGAAGATTTGCATT 9864 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || ||||| ||||||| |||||| | | ||||| ||||| || || Sbjct 4422 GTTGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCGAGCTGCTTTCCG 4481 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||| ||||| ||| | ||||||||||| |||||| ||| Sbjct 4482 GCGAAGATGAGGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTC 4541 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCG-TTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | ||| ||| || | || || ||||| ||||||||||||||| || | ||| Sbjct 4542 ACGTTCTCGATAGTGTC-CGATCCTTCGACTTCCAGGGTAATGGTCTTGCCAGTGAGCGT 4600 Query 21158 TTTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 4601 CTTCACGAAAATCTGCAT 4618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | || || | ||| | ||| |||||||| |||||||| ||||||| Sbjct 9231 TCCACCACGAAGACGAAGAACGAGATGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGA 9290 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | || |||||||| || || || |||| || | ||||||||| ||| Sbjct 9291 GAGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGG 9350 Query 21068 CACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||||| |||||| Sbjct 9351 AATTCCTTCCTTGTCCTGGATCTT 9374 >seq5007 Length=89527 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 |||||||| ||||| | || || | ||| | || ||||| || |||||||| ||||| Sbjct 22029 TTTCCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCG 22088 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || || | ||||||| || || || || || | || || | ||||||||| Sbjct 22089 GAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGA 22148 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | |||||||||||| |||||| ||||| | ||| ||||| | ||| Sbjct 22149 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCA 22208 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 22209 ACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCAT 22258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422229176579144