Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5007 120 2e-22 seq616 104 2e-17 seq611 102 5e-17 seq871 86.0 4e-12 >seq5007 Length=89527 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || || || | || |||||||| |||||||||||||| Sbjct 22260 CCTCCGCGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 22319 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | ||||| || ||||| ||||| ||||||||||| || Sbjct 22320 AGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGG 22379 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | ||||| |||||| Sbjct 22380 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCTTCGACC 22439 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||| || || || ||||| |||||||||||||||||||| ||| Sbjct 22440 TCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGGCT 22490 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| ||| || |||| || | ||||| || ||||| Sbjct 22068 TCTTTCTGAATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAG 22127 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | || |||||||| ||||| ||| | | Sbjct 22128 ATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTC 22187 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||||| || || || | |||||| || || || ||||| ||||||||| Sbjct 22188 TCGATGGTATCGGAGCCCTCAACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACA 22247 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 22248 AAGATCTGCAT 22258 >seq616 Length=1528 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| || || ||| | || || | |||||| || ||||| Sbjct 402 TTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAA 461 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 |||||| ||||||||||| ||| | | |||||||| ||||| ||| | | Sbjct 462 AATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTT 521 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | ||| || |||| ||||| || ||||||||||| ||||| || Sbjct 522 CTCGATGGTGTCCGAGCCTTCCACTTCCAAGGTGATCGTCTTGCCGGTGAGCGTTTTGAC 581 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 582 GAAGATCTGCAT 593 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| |||| || || || || | || ||| ||||| ||||||||||||||| Sbjct 139 CCTCCGCGGAGCCGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 198 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | |||||| || ||||||||||| ||||||||||| ||| Sbjct 199 AAAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGA 258 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||| || ||||| | || | || | ||| | ||||| Sbjct 259 ATTCCTTCTTTGTCCTGGATC-TTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCGAC 317 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || ||||| ||||| || ||||| ||||||||||| Sbjct 318 CTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| |||| || || ||||| | || ||| ||||| || ||||||||||| Sbjct 873 CCTCCGCGAAGCCGAAGGACGAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCGGAG 932 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || ||||| || | ||||||||||| ||| Sbjct 933 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 992 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | || || || ||||| ||| | | | |||| |||| ||| || Sbjct 993 ATTCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCACT 1052 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || ||||||||||||||||| Sbjct 1053 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1099 >seq611 Length=17302 Score = 102 bits (112), Expect = 5e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| |||| || |||||||| | || ||||||||| ||||||||||||||| Sbjct 5954 CCTCCGCGGAGCCGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6013 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | ||||||||| |||||||| || ||||||||||| ||| Sbjct 6014 AAAGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGGGGA 6073 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || || || ||| | | | |||| || | |||||| Sbjct 6074 ATTCCTTCCTTATCTTGGATTTTGGCCTTCACGTTCTCAATCGTGTCAGAGCCTTCGACC 6133 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTG 34386 || | ||||| || || |||||||| ||||| || |||||||| Sbjct 6134 TCAAGAGTGATCGTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||||| ||| | || |||| ||| || || ||||| Sbjct 5141 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGTTTTCCGGCGAAG 5200 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 ||||| ||||||||||| ||| | | |||||||| || ||||| ||| | | Sbjct 5201 ATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTC--CTGGATTTTGGCCTTCACGT 5258 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||||| ||| || || | ||||||||||| || ||||| || |||| Sbjct 5259 TCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGTGAGCGTCTTCA 5318 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 5319 CGAAGATCTGCAT 5331 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || || | ||| || ||||| ||||||||||| || Sbjct 9637 CCTCCGCGAAGACGAAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 9696 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| ||||| |||||||| || ||| Sbjct 9697 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGA 9756 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | || | | ||||| Sbjct 9757 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACC 9816 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 || | |||||||| ||||| ||||| |||||||| ||||| ||||| || Sbjct 9817 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATTGC 9866 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| ||||| || | || || ||||| | || ||| ||||| ||||||||||| | Sbjct 4390 ATCCACCGCGAAGACGAAGGACGAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCG 4449 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 |||| || | || || | |||||| || ||||| ||||| ||||| ||||| || Sbjct 4450 ACAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGG 4509 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | |||||||| ||||| ||| | | | || | || | ||||| Sbjct 4510 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATAGTGTCCGATCCTTCGA 4569 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || ||||| ||||| ||||| || ||||| || |||||||| Sbjct 4570 CTTCCAGGGTAATGGTCTTGCCAGTGAGCGTCTTCACGAAAATCTGCAT 4618 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| || || || ||| | || ||||||||||| || ||||| Sbjct 5368 TTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAA 5427 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | |||||||| || ||| | | ||||| || ||||| ||| | | Sbjct 5428 GATCAATCGCTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTGGCCTTCACGTT 5487 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | ||| || || | ||||||||||| |||||||| ||||| || Sbjct 5488 CTCGATGGTATCCGAACCTTCAACCTCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTGAC 5547 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 5548 GAAGATCTGCAT 5559 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| || || || | || || || || | ||| || ||||| ||||||||||| | Sbjct 9230 ATCCACCACGAAGACGAAGAACGAGATGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCG 9289 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | || ||| | || |||| |||||| || ||||||||||| ||||||||||| || Sbjct 9290 AGAGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGG 9349 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | |||||||| ||||| ||| | || | || | |||| ||| | Sbjct 9350 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCGGAACCTTCAA 9409 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 | || | |||||||| || || ||||| || ||||| || Sbjct 9410 CCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAA 9449 >seq871 Length=2590 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| || || || | ||||| || || ||||| ||| || || |||||||||||| Sbjct 727 ATCCACCACGGAGACGGAGCACGAGATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGT 668 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || ||| |||| || | |||||| || ||||| || | |||||||| || || Sbjct 667 TGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGG 608 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---T 34336 | | | || ||||| ||||| ||||| | | |||| | ||| || | Sbjct 607 GAATACCTTCTTTGTCCTGGATCTTCGCCTTTA----CGTTCTCGATGCTGTCAGAACCT 552 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 || || |||| ||||| || || |||||||| || ||||| ||||||||||| || Sbjct 551 TCCACTTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATTGC 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323049028975040