Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq5007 120 2e-22
seq616 104 2e-17
seq611 102 5e-17
seq871 86.0 4e-12
>seq5007
Length=89527
Score = 120 bits (132), Expect = 2e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| |||||||| | || || || || | || |||||||| ||||||||||||||
Sbjct 22260 CCTCCGCGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 22319
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| || |||| || | ||||| || ||||| ||||| ||||||||||| ||
Sbjct 22320 AGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGG 22379
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || |||||||| ||||| ||| | | | || | ||||| ||||||
Sbjct 22380 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCTTCGACC 22439
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| | |||||| || || || ||||| |||||||||||||||||||| |||
Sbjct 22440 TCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGGCT 22490
Score = 105 bits (116), Expect = 4e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|||||||| |||||||||||||| ||| || |||| || | ||||| || |||||
Sbjct 22068 TCTTTCTGAATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAG 22127
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
||||| ||||||||||| || | || |||||||| ||||| ||| | |
Sbjct 22128 ATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTC 22187
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||||| || || || | |||||| || || || ||||| |||||||||
Sbjct 22188 TCGATGGTATCGGAGCCCTCAACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACA 22247
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 22248 AAGATCTGCAT 22258
>seq616
Length=1528
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| ||||||||||| || || ||| | || || | |||||| || |||||
Sbjct 402 TTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAA 461
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|||||| ||||||||||| ||| | | |||||||| ||||| ||| | |
Sbjct 462 AATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTT 521
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | || | ||| || |||| ||||| || ||||||||||| ||||| ||
Sbjct 522 CTCGATGGTGTCCGAGCCTTCCACTTCCAAGGTGATCGTCTTGCCGGTGAGCGTTTTGAC 581
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 582 GAAGATCTGCAT 593
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| |||| || || || || | || ||| ||||| |||||||||||||||
Sbjct 139 CCTCCGCGGAGCCGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 198
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| || | || || | |||||| || ||||||||||| ||||||||||| |||
Sbjct 199 AAAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGA 258
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | || ||||| ||| || ||||| | || | || | ||| | |||||
Sbjct 259 ATTCCTTCTTTGTCCTGGATC-TTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCGAC 317
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || || || ||||| ||||| || ||||| |||||||||||
Sbjct 318 CTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| |||| || || ||||| | || ||| ||||| || |||||||||||
Sbjct 873 CCTCCGCGAAGCCGAAGGACGAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCGGAG 932
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||| || ||||| || | ||||||||||| |||
Sbjct 933 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 992
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | || || || ||||| ||| | | | |||| |||| ||| ||
Sbjct 993 ATTCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCACT 1052
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || | || |||||||||||||||||
Sbjct 1053 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1099
>seq611
Length=17302
Score = 102 bits (112), Expect = 5e-17
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| |||| || |||||||| | || ||||||||| |||||||||||||||
Sbjct 5954 CCTCCGCGGAGCCGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6013
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| || | || || | ||||||||| |||||||| || ||||||||||| |||
Sbjct 6014 AAAGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGGGGA 6073
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||| || || || ||| | | | |||| || | ||||||
Sbjct 6074 ATTCCTTCCTTATCTTGGATTTTGGCCTTCACGTTCTCAATCGTGTCAGAGCCTTCGACC 6133
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTG 34386
|| | ||||| || || |||||||| ||||| || ||||||||
Sbjct 6134 TCAAGAGTGATCGTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177
Score = 100 bits (110), Expect = 2e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| |||||||||||||||| ||| | || |||| ||| || || |||||
Sbjct 5141 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGTTTTCCGGCGAAG 5200
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316
||||| ||||||||||| ||| | | |||||||| || ||||| ||| | |
Sbjct 5201 ATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTC--CTGGATTTTGGCCTTCACGT 5258
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | ||||| ||| || || | ||||||||||| || ||||| || ||||
Sbjct 5259 TCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGTGAGCGTCTTCA 5318
Query 34377 CAAAGATCTGCAT 34389
| |||||||||||
Sbjct 5319 CGAAGATCTGCAT 5331
Score = 95.1 bits (104), Expect = 8e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || || || || | ||| || ||||| ||||||||||| ||
Sbjct 9637 CCTCCGCGAAGACGAAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 9696
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | |||||| || ||||| ||||| |||||||| || |||
Sbjct 9697 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGA 9756
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | || | || | || | | |||||
Sbjct 9757 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACC 9816
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392
|| | |||||||| ||||| ||||| |||||||| ||||| ||||| ||
Sbjct 9817 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATTGC 9866
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220
|||| ||||| || | || || ||||| | || ||| ||||| ||||||||||| |
Sbjct 4390 ATCCACCGCGAAGACGAAGGACGAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCG 4449
Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
|||| || | || || | |||||| || ||||| ||||| ||||| ||||| ||
Sbjct 4450 ACAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGG 4509
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | | |||||||| ||||| ||| | | | || | || | |||||
Sbjct 4510 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATAGTGTCCGATCCTTCGA 4569
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| || ||||| ||||| ||||| || ||||| || ||||||||
Sbjct 4570 CTTCCAGGGTAATGGTCTTGCCAGTGAGCGTCTTCACGAAAATCTGCAT 4618
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| |||||||| || || || ||| | || ||||||||||| || |||||
Sbjct 5368 TTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAA 5427
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| | |||||||| || ||| | | ||||| || ||||| ||| | |
Sbjct 5428 GATCAATCGCTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTGGCCTTCACGTT 5487
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | ||| | ||| || || | ||||||||||| |||||||| ||||| ||
Sbjct 5488 CTCGATGGTATCCGAACCTTCAACCTCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTGAC 5547
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 5548 GAAGATCTGCAT 5559
Score = 86.0 bits (94), Expect = 4e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220
|||| || || || | || || || || | ||| || ||||| ||||||||||| |
Sbjct 9230 ATCCACCACGAAGACGAAGAACGAGATGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCG 9289
Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
| || ||| | || |||| |||||| || ||||||||||| ||||||||||| ||
Sbjct 9290 AGAGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGG 9349
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | | |||||||| ||||| ||| | || | || | |||| ||| |
Sbjct 9350 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCGGAACCTTCAA 9409
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
| || | |||||||| || || ||||| || ||||| ||
Sbjct 9410 CCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAA 9449
>seq871
Length=2590
Score = 86.0 bits (94), Expect = 4e-12
Identities = 162/236 (69%), Gaps = 8/236 (3%)
Strand=Plus/Minus
Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220
|||| || || || | ||||| || || ||||| ||| || || ||||||||||||
Sbjct 727 ATCCACCACGGAGACGGAGCACGAGATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGT 668
Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
|| ||| |||| || | |||||| || ||||| || | |||||||| || ||
Sbjct 667 TGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGG 608
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---T 34336
| | | || ||||| ||||| ||||| | | |||| | ||| || |
Sbjct 607 GAATACCTTCTTTGTCCTGGATCTTCGCCTTTA----CGTTCTCGATGCTGTCAGAACCT 552
Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392
|| || |||| ||||| || || |||||||| || ||||| ||||||||||| ||
Sbjct 551 TCCACTTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATTGC 496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323049028975040
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