Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4364 120 2e-22 seq871 120 2e-22 seq611 114 1e-20 seq5007 105 5e-18 seq616 104 2e-17 seq311 104 2e-17 >seq4364 Length=177085 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||| ||| || |||| |||| || || || ||||||||||| Sbjct 156956 TCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAG 157015 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| || || ||||| | || || ||||| || || ||| || | Sbjct 157016 ATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTC 157075 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||||| |||||| || |||| ||| ||||||||||| || || |||||||| Sbjct 157076 TCAATGGTGTCCGAACCCTCGACTTCCAGGGTGATCGTCTTGCCAGTGAGGGTCTTCACG 157135 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 157136 AAGATCTGCAT 157146 >seq871 Length=2590 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| || |||||||||||||| || || |||| || || || ||||||||||| Sbjct 689 TCCTTTTGGATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAG 630 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| || || || || | ||| || |||||| || || ||| || | Sbjct 629 ATCAAACGCTGCTGATCAGGGGGAATACCTTCTTTGTCCTGGATCTTCGCCTTTACGTTC 570 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||||| ||| ||||| |||| ||| |||||||| || || || |||||||| Sbjct 569 TCGATGCTGTCAGAACCTTCCACTTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACG 510 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 509 AAGATCTGCAT 499 >seq611 Length=17302 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || |||| | || ||||| || ||||| ||||| Sbjct 4655 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAA 4714 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||| || || | || |||||||| || || ||| || Sbjct 4715 AATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTT 4774 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||||| || || ||||| | || ||||||||||| |||| |||||||| Sbjct 4775 CTCGATGGTGTCCGATCCTTCGACCTCGAGTGTGATCGTCTTGCCAGTCAAGGTCTTCAC 4834 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 4835 GAAGATCTGCATG 4847 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| | || ||||| |||||||||||||| Sbjct 5140 CTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGTTTTCCGGCGAA 5199 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | || ||||||||| ||||| ||| || Sbjct 5200 GATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTGGCCTTCACGTT 5259 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | | || ||| || ||||| | ||| || || || || || || |||||||| Sbjct 5260 CTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGTGAGCGTCTTCAC 5319 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 5320 GAAGATCTGCATG 5332 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| |||||||| ||||||||||| ||| |||| | || || || || Sbjct 4415 GTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCGAGCTG 4474 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| || | ||||||||||| || || | || |||||||| || || Sbjct 4475 CTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTT 4534 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| || || || |||| |||||| |||||||| || Sbjct 4535 GGCCTTCACGTTCTCGATAGTGTCCGATCCTTCGACTTCCAGGGTAATGGTCTTGCCAGT 4594 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||| || || |||||| Sbjct 4595 GAGCGTCTTCACGAAAATCTGCATG 4619 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| | || || || || ||||||||||| Sbjct 9672 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 9731 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | || ||||||||| || || ||| || Sbjct 9732 GATGAGGCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 9791 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||||| | |||| ||||| | ||| || |||||||| || || || ||||| Sbjct 9792 CTCGATGGTGTCCGAAGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 9851 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 9852 GAAGATTTGCAT 9863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || ||| | || ||||| || ||||||||||| Sbjct 9267 CTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAA 9326 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | || ||||||||| || || ||| || Sbjct 9327 AATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 9386 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| ||| || ||||| | ||| || ||||| || || || |||||||| Sbjct 9387 TTCAATAGTGTCGGAACCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCAC 9446 Query 45325 AAA 45327 || Sbjct 9447 GAA 9449 >seq5007 Length=89527 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| |||||||||||||||||| || ||| |||| || ||||| ||||||||||| Sbjct 22067 CTCTTTCTGAATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAA 22126 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| ||||| | || |||||||| || || ||| || Sbjct 22127 GATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTT 22186 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | | || ||||| ||||| | || |||||||| || || || || ||||| Sbjct 22187 CTCGATGGTATCGGAGCCCTCAACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCAC 22246 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 22247 AAAGATCTGCATG 22259 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| |||||||||||| || ||| |||| || ||||| ||||||||||| Sbjct 22295 CTCTTTCTGGATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAA 22354 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| ||||| | || |||||||| || || ||| || Sbjct 22355 GATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTT 22414 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | | || || || ||||| | || |||||||| || || || || ||||| Sbjct 22415 CTCGATGGTATCGGAGCCTTCGACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCAC 22474 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 22475 AAAGATCTGCATG 22487 >seq616 Length=1528 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| || ||||||||| || |||| | || ||||| || ||||||||||| Sbjct 909 TCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAG 968 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| ||||| || || | || || || ||| || || ||| || | Sbjct 969 ATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 1028 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| || ||||| |||| || || |||||||| |||| ||||||||| Sbjct 1029 TCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACA 1088 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 1089 AAGATCTGCATG 1100 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| || ||| | || || || || ||||||||||| Sbjct 1136 CTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 1195 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||| ||||| | || |||||||| || || || || Sbjct 1196 GATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATT 1255 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| || || || || | ||||||||||| || || || ||||| || Sbjct 1256 CTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATCGTCTTTCCGGTGAGCGTCTTGAC 1315 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 1316 GAAGATCTGCATG 1328 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || ||| | || || || || ||||||||||| Sbjct 403 TCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAA 462 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| ||||| || || | || |||||||| || || ||| || | Sbjct 463 ATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTC 522 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||||| || ||||| |||| ||| ||||||||||| || || || || || Sbjct 523 TCGATGGTGTCCGAGCCTTCCACTTCCAAGGTGATCGTCTTGCCGGTGAGCGTTTTGACG 582 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 583 AAGATCTGCAT 593 >seq311 Length=48857 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 45155 ATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGC 45214 |||||||||||||| || || |||| || || || ||||||||||| ||||| ||| Sbjct 16787 ATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGC 16728 Query 45215 TGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTG 45274 || || || ||||| | |||||||| ||| || || ||| || | | | |||| Sbjct 16727 TGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGCTG 16668 Query 45275 TCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGC 45334 || | | || || || | |||||| ||||| || || || |||||||| ||||| ||| Sbjct 16667 TCAGAAGCTTCGACTTCGAGGGTAATGGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGC 16608 Query 45335 AT 45336 || Sbjct 16607 AT 16606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395047109412514