Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 250 2e-61
seq611 107 2e-18
seq616 98.7 9e-16
seq4684 89.7 5e-13
seq5007 87.8 2e-12
seq3195 82.4 7e-11
>seq5716
Length=132174
Score = 250 bits (276), Expect = 2e-61
Identities = 519/769 (67%), Gaps = 31/769 (4%)
Strand=Plus/Minus
Query 22439 TTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATG 22498
|||| |||||| |||| || | ||| || || || |||| ||||| || |||||||
Sbjct 122707 TTGAGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATG 122648
Query 22499 TTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTC 22558
||||| ||| |||| |||| |||||||||||||| || || |||||||| || ||||||
Sbjct 122647 TTGGACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTC 122588
Query 22559 GGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT-GAG 22617
|||||||| || | || || ||| | | |||||||| | ||||| ||||| |||
Sbjct 122587 GGCATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTT-CTCTTTGAG 122529
Query 22618 CATCGACCAGTCCCACAGATC-----GGACGGC---------GTCACAT-TGTCCCACAT 22662
| |||||| ||| |||| ||||| | ||| | | | ||||||
Sbjct 122528 AGATGCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACAT 122469
Query 22663 ATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATA 22722
|| || |||| | || | ||| | || || || || |||||||| ||||||||
Sbjct 122468 TTCATACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATA 122409
Query 22723 TATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTT 22782
| || | ||||||||||| ||| |||| || |||| || || || || ||||||
Sbjct 122408 TTTCTCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCG 122349
Query 22783 CTTGTTCAATTCG-GCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGT 22841
|||||||| || | | | | | ||| | |||| ||||| | || ||| || |
Sbjct 122348 CTTGTTCACATCTCGAGCCTGAGG-GCTGGTGAACGGGTGGCGCATTAGCATGAAGGCAT 122290
Query 22842 CCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCT 22901
| |||| ||||||||| || || || || || || | | || || || || |
Sbjct 122289 CAGCCAAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTT 122230
Query 22902 CGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCG 22961
| || | |||||| | || | || ||| || ||||||| || | || | | || |
Sbjct 122229 CCGGTATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACCTTGG 122170
Query 22962 TTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA------ACAAACTTGT 23015
| || ||| ||||| || | | |||| || ||||| |||
Sbjct 122169 TAATCTCGTGAAGCTTTTCATAGTCG--AAGGTC---TTGT-CATCCTTCACAAATCTGT 122116
Query 23016 TGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAA 23075
| | |||| ||||| |||||||| || || || || ||| ||||| ||||| || |
Sbjct 122115 TCAAAGCGACGGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTA 122056
Query 23076 TTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGAT 23135
||||||| || ||||| ||||| ||||| |||||||| ||||||| |||||||
Sbjct 122055 TTTCGGTGCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGAT 121996
Query 23136 TGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184
|||| | ||| ||||| |||||||| || || || || |||| ||||||
Sbjct 121995 TGCATGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGA 121947
>seq611
Length=17302
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || ||||| ||||| |||||| | || |||||| ||
Sbjct 5332 CATGCAGATCTTCGTGAAGACGCTCACAGGAAAAACCATCACCCTTGAGGTTGAAGGTTC 5273
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | || | || || | ||| |||||||||||| | || || |||||
Sbjct 5272 CGATACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGACCA 5213
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || ||||| || |||||| ||||||| ||| || ||| || ||
Sbjct 5212 GCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAAGATGGCCGCACTTTGTCCGACTACAA 5153
Query 31372 CATTCAAAAAGAATCGACTCTTCA 31395
||| || || || |||||||| ||
Sbjct 5152 CATCCAGAAGGAGTCGACTCTCCA 5129
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261
||||| ||||| || || || || || |||||| |||| |||||| ||||||| | |
Sbjct 9449 TTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGGTTCCGACACTATT 9390
Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321
|||| ||||| | || |||||||||||| | || || ||||||||||| ||
Sbjct 9389 GAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGCCTC 9330
Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381
|| ||||| || || ||| ||||||| ||| | || || |||||||| ||
Sbjct 9329 ATTTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACTCTCTCGGACTACAACATTCAGAAG 9270
Query 31382 GAATCGACTCTTCATCTGGTACTT 31405
|| |||||||| ||||| || |||
Sbjct 9269 GAGTCGACTCTCCATCTCGTTCTT 9246
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| |||||||| |||| || ||| ||
Sbjct 4847 CATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACGATCACACTCGAGGTCGAAGGATC 4788
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | || || | || ||||||||||| | || || |||||
Sbjct 4787 GGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCA 4728
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || |||||||| || ||| ||||||| | || | ||| || ||
Sbjct 4727 GCAGCGATTGATTTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAA 4668
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||| || || || |||||||| ||||| || || ||||
Sbjct 4667 CATCCAGAAGGAGTCGACTCTCCATCTTGTCCTCCGACT 4629
>seq616
Length=1528
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| ||||| ||| | || || || ||
Sbjct 366 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTC 307
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | |||||| |||||| | || |||||| ||||| | || || |||||
Sbjct 306 TGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 247
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || ||||| || || ||| | || || | ||| || ||| || ||
Sbjct 246 GCAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAA 187
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||| || || |||||||| || ||||| || |||
Sbjct 186 CATCCAGAAGGAATCGACCCTCCATCTCGTCCTT 153
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || || || ||||| || | || |||||| ||
Sbjct 1328 CATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATTACTCTTGAAGTTGAAGGCTC 1269
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | |||||| | || ||||||||||| | || || |||||
Sbjct 1268 TGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCA 1209
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| || || ||| | || || ||| || ||| || ||
Sbjct 1208 GCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAA 1149
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|||||| || || || || || ||||| || |||
Sbjct 1148 CATTCAGAAGGAGTCAACCCTCCATCTCGTCCTT 1115
>seq4684
Length=226209
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||||||||| |||||||| |||||| |||| ||||| || || ||| |||| ||||| |
Sbjct 8978 AAACATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATTACCCTCGAGGTTGAGGC 8919
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||||| | |||| ||||| | || ||||||||||| | || || ||
Sbjct 8918 CTCCGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGA 8859
Query 31309 CCAGCAGCGTCTAATATTCGCTGG 31332
||| ||||| || || ||||| ||
Sbjct 8858 CCAACAGCGACTGATTTTCGCCGG 8835
>seq5007
Length=89527
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || || || || ||||| || |||||||| |||| ||||| ||
Sbjct 22259 CATGCAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTTGAGGGCTC 22200
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | |||| | || || | || |||||||||||| | || || |||||
Sbjct 22199 CGATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCA 22140
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || ||||| || || || | || ||| || | ||| || ||
Sbjct 22139 GCAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCGACTACAA 22080
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||||| ||||| ||||| || ||||| || ||| | ||| | || ||
Sbjct 22079 CATTCAGAAAGAGTCGACCCTCCATCTCGTCCTTCGTCTGCGTGGGGG 22032
Score = 86.0 bits (94), Expect = 6e-12
Identities = 160/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244
||||| |||||| || || || || || || ||||| || |||||||| |||| || |
Sbjct 22494 AATCAGCCATGCAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTCG 22435
Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304
|| ||||| | |||| | || || | || |||||||||||| | || |
Sbjct 22434 AAGGCTCCGATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTC 22375
Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364
| ||||||||||| || || ||||| || || || | || ||| || | ||
Sbjct 22374 CAGACCAGCAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCG 22315
Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
| || ||||| || ||||| ||||| || ||||| || ||| | ||| | || ||
Sbjct 22314 ACTACAACATCCAGAAAGAGTCGACCCTCCATCTCGTCCTTCGTCTGCGCGGAGG 22260
>seq3195
Length=29224
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| || || || || || || || || ||| |||| || || | ||
Sbjct 25168 ATGCAGATTTTCGTCAAAACCCTAACGGGTAAGACAATTACCCTCGAGGTCGAGGCTTCG 25109
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | |||||| | || ||||||||||||| | || || ||||||
Sbjct 25108 GACACTATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 25049
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
||||| || || ||||| || ||
Sbjct 25048 CAGCGCCTGATCTTCGCCGGTAA 25026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445733892485280
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