Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5716 250 2e-61 seq611 107 2e-18 seq616 98.7 9e-16 seq4684 89.7 5e-13 seq5007 87.8 2e-12 seq3195 82.4 7e-11 >seq5716 Length=132174 Score = 250 bits (276), Expect = 2e-61 Identities = 519/769 (67%), Gaps = 31/769 (4%) Strand=Plus/Minus Query 22439 TTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATG 22498 |||| |||||| |||| || | ||| || || || |||| ||||| || ||||||| Sbjct 122707 TTGAGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATG 122648 Query 22499 TTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTC 22558 ||||| ||| |||| |||| |||||||||||||| || || |||||||| || |||||| Sbjct 122647 TTGGACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTC 122588 Query 22559 GGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT-GAG 22617 |||||||| || | || || ||| | | |||||||| | ||||| ||||| ||| Sbjct 122587 GGCATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTT-CTCTTTGAG 122529 Query 22618 CATCGACCAGTCCCACAGATC-----GGACGGC---------GTCACAT-TGTCCCACAT 22662 | |||||| ||| |||| ||||| | ||| | | | |||||| Sbjct 122528 AGATGCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACAT 122469 Query 22663 ATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATA 22722 || || |||| | || | ||| | || || || || |||||||| |||||||| Sbjct 122468 TTCATACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATA 122409 Query 22723 TATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTT 22782 | || | ||||||||||| ||| |||| || |||| || || || || |||||| Sbjct 122408 TTTCTCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCG 122349 Query 22783 CTTGTTCAATTCG-GCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGT 22841 |||||||| || | | | | | ||| | |||| ||||| | || ||| || | Sbjct 122348 CTTGTTCACATCTCGAGCCTGAGG-GCTGGTGAACGGGTGGCGCATTAGCATGAAGGCAT 122290 Query 22842 CCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCT 22901 | |||| ||||||||| || || || || || || | | || || || || | Sbjct 122289 CAGCCAAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTT 122230 Query 22902 CGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCG 22961 | || | |||||| | || | || ||| || ||||||| || | || | | || | Sbjct 122229 CCGGTATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACCTTGG 122170 Query 22962 TTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA------ACAAACTTGT 23015 | || ||| ||||| || | | |||| || ||||| ||| Sbjct 122169 TAATCTCGTGAAGCTTTTCATAGTCG--AAGGTC---TTGT-CATCCTTCACAAATCTGT 122116 Query 23016 TGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAA 23075 | | |||| ||||| |||||||| || || || || ||| ||||| ||||| || | Sbjct 122115 TCAAAGCGACGGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTA 122056 Query 23076 TTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGAT 23135 ||||||| || ||||| ||||| ||||| |||||||| ||||||| ||||||| Sbjct 122055 TTTCGGTGCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGAT 121996 Query 23136 TGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 |||| | ||| ||||| |||||||| || || || || |||| |||||| Sbjct 121995 TGCATGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGA 121947 >seq611 Length=17302 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || ||||| ||||| |||||| | || |||||| || Sbjct 5332 CATGCAGATCTTCGTGAAGACGCTCACAGGAAAAACCATCACCCTTGAGGTTGAAGGTTC 5273 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || || | ||| |||||||||||| | || || ||||| Sbjct 5272 CGATACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGACCA 5213 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || |||||| ||||||| ||| || ||| || || Sbjct 5212 GCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAAGATGGCCGCACTTTGTCCGACTACAA 5153 Query 31372 CATTCAAAAAGAATCGACTCTTCA 31395 ||| || || || |||||||| || Sbjct 5152 CATCCAGAAGGAGTCGACTCTCCA 5129 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || || || || |||||| |||| |||||| ||||||| | | Sbjct 9449 TTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGGTTCCGACACTATT 9390 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 |||| ||||| | || |||||||||||| | || || ||||||||||| || Sbjct 9389 GAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGCCTC 9330 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||| || || ||| ||||||| ||| | || || |||||||| || Sbjct 9329 ATTTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACTCTCTCGGACTACAACATTCAGAAG 9270 Query 31382 GAATCGACTCTTCATCTGGTACTT 31405 || |||||||| ||||| || ||| Sbjct 9269 GAGTCGACTCTCCATCTCGTTCTT 9246 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| |||||||| |||| || ||| || Sbjct 4847 CATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACGATCACACTCGAGGTCGAAGGATC 4788 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || ||||||||||| | || || ||||| Sbjct 4787 GGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCA 4728 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || |||||||| || ||| ||||||| | || | ||| || || Sbjct 4727 GCAGCGATTGATTTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAA 4668 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || || || |||||||| ||||| || || |||| Sbjct 4667 CATCCAGAAGGAGTCGACTCTCCATCTTGTCCTCCGACT 4629 >seq616 Length=1528 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| ||||| ||| | || || || || Sbjct 366 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTC 307 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| |||||| | || |||||| ||||| | || || ||||| Sbjct 306 TGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 247 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || || ||| | || || | ||| || ||| || || Sbjct 246 GCAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAA 187 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || |||||||| || ||||| || ||| Sbjct 186 CATCCAGAAGGAATCGACCCTCCATCTCGTCCTT 153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || ||||| || | || |||||| || Sbjct 1328 CATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATTACTCTTGAAGTTGAAGGCTC 1269 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| | || ||||||||||| | || || ||||| Sbjct 1268 TGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCA 1209 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || || ||| | || || ||| || ||| || || Sbjct 1208 GCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAA 1149 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || || || || || ||||| || ||| Sbjct 1148 CATTCAGAAGGAGTCAACCCTCCATCTCGTCCTT 1115 >seq4684 Length=226209 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| |||||||| |||||| |||| ||||| || || ||| |||| ||||| | Sbjct 8978 AAACATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATTACCCTCGAGGTTGAGGC 8919 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| | |||| ||||| | || ||||||||||| | || || || Sbjct 8918 CTCCGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGA 8859 Query 31309 CCAGCAGCGTCTAATATTCGCTGG 31332 ||| ||||| || || ||||| || Sbjct 8858 CCAACAGCGACTGATTTTCGCCGG 8835 >seq5007 Length=89527 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || ||||| || |||||||| |||| ||||| || Sbjct 22259 CATGCAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTTGAGGGCTC 22200 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | || || | || |||||||||||| | || || ||||| Sbjct 22199 CGATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCA 22140 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || || || | || ||| || | ||| || || Sbjct 22139 GCAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCGACTACAA 22080 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||| ||||| || ||||| || ||| | ||| | || || Sbjct 22079 CATTCAGAAAGAGTCGACCCTCCATCTCGTCCTTCGTCTGCGTGGGGG 22032 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 ||||| |||||| || || || || || || ||||| || |||||||| |||| || | Sbjct 22494 AATCAGCCATGCAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTCG 22435 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 || ||||| | |||| | || || | || |||||||||||| | || | Sbjct 22434 AAGGCTCCGATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTC 22375 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | ||||||||||| || || ||||| || || || | || ||| || | || Sbjct 22374 CAGACCAGCAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCG 22315 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| || ||||| ||||| || ||||| || ||| | ||| | || || Sbjct 22314 ACTACAACATCCAGAAAGAGTCGACCCTCCATCTCGTCCTTCGTCTGCGCGGAGG 22260 >seq3195 Length=29224 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || || || || ||| |||| || || | || Sbjct 25168 ATGCAGATTTTCGTCAAAACCCTAACGGGTAAGACAATTACCCTCGAGGTCGAGGCTTCG 25109 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | |||||| | || ||||||||||||| | || || |||||| Sbjct 25108 GACACTATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 25049 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 ||||| || || ||||| || || Sbjct 25048 CAGCGCCTGATCTTCGCCGGTAA 25026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445733892485280