Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5716 89.7 1e-12 seq5071 84.2 4e-11 >seq5716 Length=132174 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 94161 ATACTTCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGA 94220 || ||||||||| |||| | |||| || |||| |||||| || || ||| || | Sbjct 122132 ATCCTTCACAAATCTGTTCAAAGCGACGGAGGCCAGATTGCAAACAGCGACTTCATCTGG 122073 Query 94221 ATCACTGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTC 94280 |||||| || ||||| ||||||| |||||| ||||||| | || | ||| | Sbjct 122072 GGACGAGTACTGCACTATTTCGGTGCACAGATTTGAGCACTTGATCGTTCCCAAATTCTT 122013 Query 94281 TTGGTTAGACTTTCTATTGATGGTATCCT--TAAAGCACACATAAGGTGTTCCAGTTTCG 94338 ||||||||||||| |||| | ||| | ||||| || ||||| ||||| |||||| Sbjct 122012 CTGGTTAGACTTTCGATTGCATGCATCTTTGTAAAG--CATGTAAGGAGTTCCGGTTTCG 121955 Query 94339 AT 94340 || Sbjct 121954 AT 121953 >seq5071 Length=368534 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 ||||| ||||| || || || || ||||| || | ||||| |||| |||||| | Sbjct 135243 GCCTTCGCTGCTGTGGAGGGCATTTTCTTCTCAGGATCGTTCGCTGCCATATTCTGGTTG 135184 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 || || | ||| | ||||||| |||||| | ||| || ||||||| |||| ||| Sbjct 135183 AAAAAGCGTGGTCTCATGCCTGGCCTCACCCACAGCAACGAACTCATTTCCCGGGATGAA 135124 Query 102041 GGTCTTCATCGCGACTTTGCATGC 102064 || || ||||||||||| |||||| Sbjct 135123 GGCCTACATCGCGACTTCGCATGC 135100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989510030451470