Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1811 235 2e-57 >seq1811 Length=36858 Score = 235 bits (260), Expect = 2e-57 Identities = 615/917 (67%), Gaps = 32/917 (3%) Strand=Plus/Plus Query 5145 GAAGTCGCGATGTCGCTTAACACCCTTTCGCCGGGTGCTGGCGGCGTCCTGGTGCCCGAG 5204 || || || ||| |||| ||||| | |||| |||||||| || || |||||||| || Sbjct 18580 GATGTAGCCATGGCGCTGAACACTGTAACGCCAGGTGCTGGTGGGGTTCTGGTGCCTCAG 18639 Query 5205 AACCTGTCGAGCGAGGTCATCGAACTGCTGCGTCCGAAGTCCGTCGTTCGCAAGCTCGGC 5264 ||| | ||| ||| |||| ||| |||||| || | ||| ||||| ||||| | || Sbjct 18640 AACTTTGCGACAGAGATCATTGAAGCGCTGCGCCCCATGTCGGTCGTGCGCAAAATGGGT 18699 Query 5265 GCGCGCACGCTGCCGCTCTCGAACGGCAACATCACCATCCCGCGCCTGAAGGGTGGCGCG 5324 || || | |||||||| ||||||||| | || ||||| | | ||| | || Sbjct 18700 GCCCGAAGCCTGCCGCTAAACAACGGCAACCTGACGCAGCCGCGAATTACCGGTAACACG 18759 Query 5325 ATCGTCGGCTACATCGGTGCTGACACCGATATCCCGACGAC-GCAACAACAGTTCGACGA 5383 ||||| |||||||||||||| |||||||||||| || | | ||| |||| || Sbjct 18760 GTCGTCACTTACATCGGTGCTGATACCGATATCCCGGTCACTGGTATGACA-TTCGCTGA 18818 Query 5384 TCTGAAGCTGACGGCGAAGAAGATGGCCGCGCTGGTGCCGATCGCAAATGACCTGAT--C 5441 | |||||| | |||||||| ||| || | || |||||| | ||||||||||| | Sbjct 18819 TACCAAGCTGTCTGCGAAGAAAGCGGCGGCAATTGTTCCGATCTCCAATGACCTGATTGC 18878 Query 5442 AAGTACGCCGGCGTGAATCC--GAACGTCGATCAGATCGTGGTCGGCGACCTCACCGCCG 5499 || |||| ||||| | || |||| ||| | ||||| ||| | || || | Sbjct 18879 AA--ACGCTGGCGTCAGCCCACGAAC--CGACGACATCGTCGTCAGTGATCTGGTTGTGT 18934 Query 5500 CGATCGGCGCGCGCG-AAGACAAGGCGTTCATTCGCGACGACGGCA-CGGCGAACACCCC 5557 |||| || || || ||||| | || || || ||| || | |||| | ||| Sbjct 18935 CGATGGG-GCTTTCGGAAGACCTGCACTTTATCCGTTCCGATGGTAGCGGCACGCTGCCC 18993 Query 5558 GAAGGGCCTGCGCTTCTGGGCGCTTCCCAGCAACGTCATCACCGCAAGCGACGCTTCGA- 5616 ||||| |||| | |||||| | | |||||| | |||| ||| ||| | | Sbjct 18994 -AAGGGGATGCGTTACTGGGCCCCGGCGTTCAACGTGTTGCCCGCGCCCGATGCTGCAAA 19052 Query 5617 -----CGCTGCAAAAGATCGAAACGGATCT-CGGCAAAGTCATTCTTGCGCTTGAAAACG 5670 | ||| | |||||||| | | ||| |||| | || ||| || |||| | Sbjct 19053 CATCACCCTGGAGAAGATCGAT-CTGTTCTGCGGCGGCATGATGCTTCGCCTCGAAACGG 19111 Query 5671 CTGACGCCAATCTGACGCAGCCC-GGCTGGATCATGGCCCCGCGCACGTTCCGCTTCCTC 5729 | ||| | ||| | ||| |||||| | ||| ||||| || || | || Sbjct 19112 CCAACGTGATGATGAAG-AGCTGTGGCTGGTTGATGCATCCGCGTGTCTTTCGTTGGCT- 19169 Query 5730 GAAGGC-TTGCGCGACGGGAACGGCAACAAAGTCTATCCGGAACTCGCCAACGGCATGCT 5788 | || | |||||||| || || |||||||| | ||||||||| | | | ||| || | Sbjct 19170 GCAGTCGTTGCGCGATGGCAATGGCAACAAGGCGTATCCGGAAATTGAACAGGGCTTGTT 19229 Query 5789 GAAGGGCTACCCGGTGGGAAAAACGACGCAAGTACCGATCAATCTCGGCGAAACCGGCAA 5848 |||||||| |||||||| | | || | ||| | || ||||| | ||||| Sbjct 19230 CAAGGGCTATCCGGTGGGCCTGAGCAATCAGATCCCGGTAAACCTCGGGGCTGGTGGCAA 19289 Query 5849 GGAGTCGGAGATCTACTTCACCGACTTCGGCGACGTTTTCATCGGCGAGGAAGAAACG-- 5906 ||| | || | |||||| | |||||| |||| | | |||||||| ||||| | Sbjct 19290 CGAGACTGAATTTTACTTCGTCAACTTCGCCGACATGATGATCGGCGA---AGAAATGGA 19346 Query 5907 -CTGGAGATCGACTACAGCAAGGAAGCCACCTACAAGGACGCCGACGGCCACATGGTCAG 5965 ||| ||| | ||| | || || ||||||||||||| |||||| ||||||| || Sbjct 19347 CCTGACTATCTCGTTCAGTAGCGAGGCTTCCTACAAGGACGCTGACGGCAACATGGTGAG 19406 Query 5966 TGCATTCCAGCGCGACCAGACGCTGATTCGCGTGATCGCAAAGAACGACTTCGGCCCGCG 6025 ||| |||||||| |||||||| ||| | || |||||||| ||||||| |||||||| Sbjct 19407 TGCGTTCCAGCGTGACCAGACCCTGGTCAAGGTAATCGCAAAACACGACTTTGGCCCGCG 19466 Query 6026 TCACGTCGAGTCGATCG 6042 |||||| || | |||| Sbjct 19467 TCACGTTGAATGCATCG 19483 Score = 206 bits (228), Expect = 9e-49 Identities = 408/600 (68%), Gaps = 8/600 (1%) Strand=Plus/Plus Query 3015 GCAGTACGCCGGCAAGTCGTTCATGAACGG---CACGGCACTGTCGGGTGTGATCGAGCG 3071 ||||||| |||||||| || || || ||||| ||||||| ||||||||||| Sbjct 16503 GCAGTACACCGGCAAGAGCTTTGCCAATGGTGTCACGG---TGTCGGGCGTGATCGAGCG 16559 Query 3072 GCCGAAGGATGCCCCGGCGCTCAAGGACCAAGCCAGCGTGGATCGCATCACCGATGGCTG 3131 || || ||||||||| ||||||| || | || | || ||| |||| || Sbjct 16560 CCCCCGTGAAGCCCCGGCGATCAAGGATCAGGGAAGTATCGACAAGATCGTCGATCAGTG 16619 Query 3132 GAACGCGAAGTTCGGCGGATCTGGTAACGCGAAGAAAGTTGCGCTCCTGCAGGAGGGCAT 3191 | |||||| ||||| | ||||| ||||| || ||||| || || ||||| || Sbjct 16620 GGGGCAGAAGTTTGGCGGCATGGACAACGCCAAGAAGGTGGCGCTGCTTCAAGAGGGGAT 16679 Query 3192 GACGTTCAGGCCGCTATCGATGACGAACGTCGATGCAGCGCTGATCGACGCGCTGC-GCC 3250 ||| |||| || | || |||| ||||| ||||| | | | | | || | | Sbjct 16680 GACTTTCAAACCCGTCTCCATGAACAACGTTGATGCGGAGGTACTGGGGATCCTCAAGGC 16739 Query 3251 TTTCCGCGCTCGACATCGCGCGGATCTACAAGATCCCGGCTCACATGGTGAACGAGTTGG 3310 | | || | ||| || || ||||||||||||| || | |||||||||||| ||| Sbjct 16740 TACCGGCAC-CGATATTGCCAGGATCTACAAGATTCCATTGCCCATGGTGAACGACCTGG 16798 Query 3311 AGCGAGCCACGTTCAGCAACATCGAGCACCAGTCGCTCCAGTTCGTCATCTACACGCTGT 3370 || ||| | || || | | || || | | ||||||| || | | | || Sbjct 16799 AGAAGTCCAATTACAACACCCTGGAACAGCTCATGATCCAGTTTGTGGTGTTCGGCTTGC 16858 Query 3371 TGCCGTGGGTCAAGCGGCATGAGCAGGCGAAGACGCGCGACCTTTTGCTGCCGTCGGAGC 3430 |||| ||||| ||||| || || ||||| | || |||||| || |||||| ||| | Sbjct 16859 TGCCCTGGGTGAAGCGTCACGAACAGGCAATGATGCGCGATTTTCTGCTGCTCAAGGATC 16918 Query 3431 GCAAGCAGTACTTCATCGAATACAACCTCGCCGGGCTGCTGCGCGGCGATCAGTCGTCGC 3490 | | ||||||||||||| | ||||||| |||| |||||||||||||| ||| | | Sbjct 16919 GGCGGGAGTACTTCATCGAGTTCAACCTCTCCGGCCTGCTGCGCGGCGACCAGAAGAGCC 16978 Query 3491 GATACGCCGCCTACGCGGTCGGGCGCCAGTGGGGCTGGCTGTCGATCAACGACATCCGGC 3550 | |||| || || || | || || || ||||||||| || | || |||||||| | Sbjct 16979 GCTACGAGGCATATGCCATTGGCCGGCAATGGGGCTGGTTGAGTGTAAATGACATCCGCC 17038 Query 3551 GGCTTGAGAACATGCCGCCGGTCAAGGGCGGCGACATCTACCTGAGCCCGATGAACATGG 3610 | || || ||||||||||| || || ||||| ||||| ||| ||| ||||||||| Sbjct 17039 GCCTGGAAAACATGCCGCCTGTACCTGGTGGCGATATCTATCTGCAACCGTTGAACATGG 17098 Score = 174 bits (192), Expect = 5e-39 Identities = 323/463 (70%), Gaps = 22/463 (5%) Strand=Plus/Plus Query 3984 TGCGAGCCGATGACCAGCTACGAAGGCCTGCG--CTCTGCCGTGAATCAGGCGGTCGCAG 4041 |||||| |||||||||| || ||| ||||||| | | | | | | | |||||||| | Sbjct 17469 TGCGAGACGATGACCAGTTATGAAAGCCTGCGGGCGCAACTGCGCAAC--GCGGTCGCCG 17526 Query 4042 ATCCGGCGGTCGAACATATCGTGCTCGACATCGACAGCAACGGCGGGAGCGCGACCGGCG 4101 ||||| |||||| | ||||||||||| ||||| ||| ||| ||| ||| || | Sbjct 17527 ATCCGATGGTCGAGCGCATCGTGCTCGATATCGATAGCCCCGGTGGGTCTGCGGTGGGGG 17586 Query 4102 CGTTCGAGCTGGCGGACGACATCCGCGC--TGCCTCGTTGGTGAAGCCGATCACCGCAAT 4159 |||| ||| |||| | |||||||| || || | | | ||| |||||||||| || Sbjct 17587 CGTTTGAGTTGGCTGCTGACATCCGAGCCATGGCCC--AGCAGAAACCGATCACCGGCAT 17644 Query 4160 CGTCAACTTCTCGGCTTTCTCGGGCGGCTACCTGATC---GCAGCC-GCAGCGTCGAAGG 4215 ||||||||| ||| | | |||||||| ||| || || ||| |||| | || Sbjct 17645 CGTCAACTTTATGGCCTACAGCGGCGGCTATCTGCTCGGGGCTGCCTGCAGTG----AGC 17700 Query 4216 TGATCGTCAGCCGCACTTCGGGCGTAGGGTCGATCGGCGTCATCGCCAACCATCTCGACG 4275 || |||| || | || || || || || || || || ||||||| ||| | ||| Sbjct 17701 TGGTCGTGAGTCAGACCAGCGGAGTCGGATCTATTGGTGTGATCGCCAGCCACATGGACC 17760 Query 4276 TATCGAAGCGGGATGAGCAGCA-GGGGATCAAGGTGACGTCAGTGTTTGCCGGGGACCAC 4334 || ||| ||| || ||| ||| | |||||||| | || ||||| || | ||| Sbjct 17761 GTTCCAAGATGGAAGA-AGGCATGGGCGTGAAGGTGACCACGGTTTTTGCTGGCGCCCAT 17819 Query 4335 AAGAACGATCTCACCCCGCATGAGCCGCTGAGCGACCAGTCGCTGACGTTCCTGACGAGC 4394 || || ||||| | ||| ||||||||| ||||||| ||||| |||| || ||||| | Sbjct 17820 AAAAATGATCTGAGCCCTCATGAGCCGTTGAGCGATCAGTCTCTGAAGTACCTGA--ATG 17877 Query 4395 ATG--GTGCAAAACAGCTACAAGCAATTCGTCGACGCAATCGC 4435 ||| ||||| | ||||| ||| ||||| |||| ||||| Sbjct 17878 ATGTCGTGCAGGAAAGCTATCAGCTCTTCGTTAACGCCATCGC 17920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170660176057180