Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_003309.1
Length=53373
Score E
Sequences producing significant alignments: (Bits) Value
seq1811 235 2e-57
>seq1811
Length=36858
Score = 235 bits (260), Expect = 2e-57
Identities = 615/917 (67%), Gaps = 32/917 (3%)
Strand=Plus/Plus
Query 5145 GAAGTCGCGATGTCGCTTAACACCCTTTCGCCGGGTGCTGGCGGCGTCCTGGTGCCCGAG 5204
|| || || ||| |||| ||||| | |||| |||||||| || || |||||||| ||
Sbjct 18580 GATGTAGCCATGGCGCTGAACACTGTAACGCCAGGTGCTGGTGGGGTTCTGGTGCCTCAG 18639
Query 5205 AACCTGTCGAGCGAGGTCATCGAACTGCTGCGTCCGAAGTCCGTCGTTCGCAAGCTCGGC 5264
||| | ||| ||| |||| ||| |||||| || | ||| ||||| ||||| | ||
Sbjct 18640 AACTTTGCGACAGAGATCATTGAAGCGCTGCGCCCCATGTCGGTCGTGCGCAAAATGGGT 18699
Query 5265 GCGCGCACGCTGCCGCTCTCGAACGGCAACATCACCATCCCGCGCCTGAAGGGTGGCGCG 5324
|| || | |||||||| ||||||||| | || ||||| | | ||| | ||
Sbjct 18700 GCCCGAAGCCTGCCGCTAAACAACGGCAACCTGACGCAGCCGCGAATTACCGGTAACACG 18759
Query 5325 ATCGTCGGCTACATCGGTGCTGACACCGATATCCCGACGAC-GCAACAACAGTTCGACGA 5383
||||| |||||||||||||| |||||||||||| || | | ||| |||| ||
Sbjct 18760 GTCGTCACTTACATCGGTGCTGATACCGATATCCCGGTCACTGGTATGACA-TTCGCTGA 18818
Query 5384 TCTGAAGCTGACGGCGAAGAAGATGGCCGCGCTGGTGCCGATCGCAAATGACCTGAT--C 5441
| |||||| | |||||||| ||| || | || |||||| | ||||||||||| |
Sbjct 18819 TACCAAGCTGTCTGCGAAGAAAGCGGCGGCAATTGTTCCGATCTCCAATGACCTGATTGC 18878
Query 5442 AAGTACGCCGGCGTGAATCC--GAACGTCGATCAGATCGTGGTCGGCGACCTCACCGCCG 5499
|| |||| ||||| | || |||| ||| | ||||| ||| | || || |
Sbjct 18879 AA--ACGCTGGCGTCAGCCCACGAAC--CGACGACATCGTCGTCAGTGATCTGGTTGTGT 18934
Query 5500 CGATCGGCGCGCGCG-AAGACAAGGCGTTCATTCGCGACGACGGCA-CGGCGAACACCCC 5557
|||| || || || ||||| | || || || ||| || | |||| | |||
Sbjct 18935 CGATGGG-GCTTTCGGAAGACCTGCACTTTATCCGTTCCGATGGTAGCGGCACGCTGCCC 18993
Query 5558 GAAGGGCCTGCGCTTCTGGGCGCTTCCCAGCAACGTCATCACCGCAAGCGACGCTTCGA- 5616
||||| |||| | |||||| | | |||||| | |||| ||| ||| | |
Sbjct 18994 -AAGGGGATGCGTTACTGGGCCCCGGCGTTCAACGTGTTGCCCGCGCCCGATGCTGCAAA 19052
Query 5617 -----CGCTGCAAAAGATCGAAACGGATCT-CGGCAAAGTCATTCTTGCGCTTGAAAACG 5670
| ||| | |||||||| | | ||| |||| | || ||| || |||| |
Sbjct 19053 CATCACCCTGGAGAAGATCGAT-CTGTTCTGCGGCGGCATGATGCTTCGCCTCGAAACGG 19111
Query 5671 CTGACGCCAATCTGACGCAGCCC-GGCTGGATCATGGCCCCGCGCACGTTCCGCTTCCTC 5729
| ||| | ||| | ||| |||||| | ||| ||||| || || | ||
Sbjct 19112 CCAACGTGATGATGAAG-AGCTGTGGCTGGTTGATGCATCCGCGTGTCTTTCGTTGGCT- 19169
Query 5730 GAAGGC-TTGCGCGACGGGAACGGCAACAAAGTCTATCCGGAACTCGCCAACGGCATGCT 5788
| || | |||||||| || || |||||||| | ||||||||| | | | ||| || |
Sbjct 19170 GCAGTCGTTGCGCGATGGCAATGGCAACAAGGCGTATCCGGAAATTGAACAGGGCTTGTT 19229
Query 5789 GAAGGGCTACCCGGTGGGAAAAACGACGCAAGTACCGATCAATCTCGGCGAAACCGGCAA 5848
|||||||| |||||||| | | || | ||| | || ||||| | |||||
Sbjct 19230 CAAGGGCTATCCGGTGGGCCTGAGCAATCAGATCCCGGTAAACCTCGGGGCTGGTGGCAA 19289
Query 5849 GGAGTCGGAGATCTACTTCACCGACTTCGGCGACGTTTTCATCGGCGAGGAAGAAACG-- 5906
||| | || | |||||| | |||||| |||| | | |||||||| ||||| |
Sbjct 19290 CGAGACTGAATTTTACTTCGTCAACTTCGCCGACATGATGATCGGCGA---AGAAATGGA 19346
Query 5907 -CTGGAGATCGACTACAGCAAGGAAGCCACCTACAAGGACGCCGACGGCCACATGGTCAG 5965
||| ||| | ||| | || || ||||||||||||| |||||| ||||||| ||
Sbjct 19347 CCTGACTATCTCGTTCAGTAGCGAGGCTTCCTACAAGGACGCTGACGGCAACATGGTGAG 19406
Query 5966 TGCATTCCAGCGCGACCAGACGCTGATTCGCGTGATCGCAAAGAACGACTTCGGCCCGCG 6025
||| |||||||| |||||||| ||| | || |||||||| ||||||| ||||||||
Sbjct 19407 TGCGTTCCAGCGTGACCAGACCCTGGTCAAGGTAATCGCAAAACACGACTTTGGCCCGCG 19466
Query 6026 TCACGTCGAGTCGATCG 6042
|||||| || | ||||
Sbjct 19467 TCACGTTGAATGCATCG 19483
Score = 206 bits (228), Expect = 9e-49
Identities = 408/600 (68%), Gaps = 8/600 (1%)
Strand=Plus/Plus
Query 3015 GCAGTACGCCGGCAAGTCGTTCATGAACGG---CACGGCACTGTCGGGTGTGATCGAGCG 3071
||||||| |||||||| || || || ||||| ||||||| |||||||||||
Sbjct 16503 GCAGTACACCGGCAAGAGCTTTGCCAATGGTGTCACGG---TGTCGGGCGTGATCGAGCG 16559
Query 3072 GCCGAAGGATGCCCCGGCGCTCAAGGACCAAGCCAGCGTGGATCGCATCACCGATGGCTG 3131
|| || ||||||||| ||||||| || | || | || ||| |||| ||
Sbjct 16560 CCCCCGTGAAGCCCCGGCGATCAAGGATCAGGGAAGTATCGACAAGATCGTCGATCAGTG 16619
Query 3132 GAACGCGAAGTTCGGCGGATCTGGTAACGCGAAGAAAGTTGCGCTCCTGCAGGAGGGCAT 3191
| |||||| ||||| | ||||| ||||| || ||||| || || ||||| ||
Sbjct 16620 GGGGCAGAAGTTTGGCGGCATGGACAACGCCAAGAAGGTGGCGCTGCTTCAAGAGGGGAT 16679
Query 3192 GACGTTCAGGCCGCTATCGATGACGAACGTCGATGCAGCGCTGATCGACGCGCTGC-GCC 3250
||| |||| || | || |||| ||||| ||||| | | | | | || | |
Sbjct 16680 GACTTTCAAACCCGTCTCCATGAACAACGTTGATGCGGAGGTACTGGGGATCCTCAAGGC 16739
Query 3251 TTTCCGCGCTCGACATCGCGCGGATCTACAAGATCCCGGCTCACATGGTGAACGAGTTGG 3310
| | || | ||| || || ||||||||||||| || | |||||||||||| |||
Sbjct 16740 TACCGGCAC-CGATATTGCCAGGATCTACAAGATTCCATTGCCCATGGTGAACGACCTGG 16798
Query 3311 AGCGAGCCACGTTCAGCAACATCGAGCACCAGTCGCTCCAGTTCGTCATCTACACGCTGT 3370
|| ||| | || || | | || || | | ||||||| || | | | ||
Sbjct 16799 AGAAGTCCAATTACAACACCCTGGAACAGCTCATGATCCAGTTTGTGGTGTTCGGCTTGC 16858
Query 3371 TGCCGTGGGTCAAGCGGCATGAGCAGGCGAAGACGCGCGACCTTTTGCTGCCGTCGGAGC 3430
|||| ||||| ||||| || || ||||| | || |||||| || |||||| ||| |
Sbjct 16859 TGCCCTGGGTGAAGCGTCACGAACAGGCAATGATGCGCGATTTTCTGCTGCTCAAGGATC 16918
Query 3431 GCAAGCAGTACTTCATCGAATACAACCTCGCCGGGCTGCTGCGCGGCGATCAGTCGTCGC 3490
| | ||||||||||||| | ||||||| |||| |||||||||||||| ||| | |
Sbjct 16919 GGCGGGAGTACTTCATCGAGTTCAACCTCTCCGGCCTGCTGCGCGGCGACCAGAAGAGCC 16978
Query 3491 GATACGCCGCCTACGCGGTCGGGCGCCAGTGGGGCTGGCTGTCGATCAACGACATCCGGC 3550
| |||| || || || | || || || ||||||||| || | || |||||||| |
Sbjct 16979 GCTACGAGGCATATGCCATTGGCCGGCAATGGGGCTGGTTGAGTGTAAATGACATCCGCC 17038
Query 3551 GGCTTGAGAACATGCCGCCGGTCAAGGGCGGCGACATCTACCTGAGCCCGATGAACATGG 3610
| || || ||||||||||| || || ||||| ||||| ||| ||| |||||||||
Sbjct 17039 GCCTGGAAAACATGCCGCCTGTACCTGGTGGCGATATCTATCTGCAACCGTTGAACATGG 17098
Score = 174 bits (192), Expect = 5e-39
Identities = 323/463 (70%), Gaps = 22/463 (5%)
Strand=Plus/Plus
Query 3984 TGCGAGCCGATGACCAGCTACGAAGGCCTGCG--CTCTGCCGTGAATCAGGCGGTCGCAG 4041
|||||| |||||||||| || ||| ||||||| | | | | | | | |||||||| |
Sbjct 17469 TGCGAGACGATGACCAGTTATGAAAGCCTGCGGGCGCAACTGCGCAAC--GCGGTCGCCG 17526
Query 4042 ATCCGGCGGTCGAACATATCGTGCTCGACATCGACAGCAACGGCGGGAGCGCGACCGGCG 4101
||||| |||||| | ||||||||||| ||||| ||| ||| ||| ||| || |
Sbjct 17527 ATCCGATGGTCGAGCGCATCGTGCTCGATATCGATAGCCCCGGTGGGTCTGCGGTGGGGG 17586
Query 4102 CGTTCGAGCTGGCGGACGACATCCGCGC--TGCCTCGTTGGTGAAGCCGATCACCGCAAT 4159
|||| ||| |||| | |||||||| || || | | | ||| |||||||||| ||
Sbjct 17587 CGTTTGAGTTGGCTGCTGACATCCGAGCCATGGCCC--AGCAGAAACCGATCACCGGCAT 17644
Query 4160 CGTCAACTTCTCGGCTTTCTCGGGCGGCTACCTGATC---GCAGCC-GCAGCGTCGAAGG 4215
||||||||| ||| | | |||||||| ||| || || ||| |||| | ||
Sbjct 17645 CGTCAACTTTATGGCCTACAGCGGCGGCTATCTGCTCGGGGCTGCCTGCAGTG----AGC 17700
Query 4216 TGATCGTCAGCCGCACTTCGGGCGTAGGGTCGATCGGCGTCATCGCCAACCATCTCGACG 4275
|| |||| || | || || || || || || || || ||||||| ||| | |||
Sbjct 17701 TGGTCGTGAGTCAGACCAGCGGAGTCGGATCTATTGGTGTGATCGCCAGCCACATGGACC 17760
Query 4276 TATCGAAGCGGGATGAGCAGCA-GGGGATCAAGGTGACGTCAGTGTTTGCCGGGGACCAC 4334
|| ||| ||| || ||| ||| | |||||||| | || ||||| || | |||
Sbjct 17761 GTTCCAAGATGGAAGA-AGGCATGGGCGTGAAGGTGACCACGGTTTTTGCTGGCGCCCAT 17819
Query 4335 AAGAACGATCTCACCCCGCATGAGCCGCTGAGCGACCAGTCGCTGACGTTCCTGACGAGC 4394
|| || ||||| | ||| ||||||||| ||||||| ||||| |||| || ||||| |
Sbjct 17820 AAAAATGATCTGAGCCCTCATGAGCCGTTGAGCGATCAGTCTCTGAAGTACCTGA--ATG 17877
Query 4395 ATG--GTGCAAAACAGCTACAAGCAATTCGTCGACGCAATCGC 4435
||| ||||| | ||||| ||| ||||| |||| |||||
Sbjct 17878 ATGTCGTGCAGGAAAGCTATCAGCTCTTCGTTAACGCCATCGC 17920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 170660176057180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |