Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 179 5e-40
seq5071 109 7e-19
>seq5716
Length=132174
Score = 179 bits (198), Expect = 5e-40
Identities = 511/791 (65%), Gaps = 21/791 (3%)
Strand=Plus/Minus
Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429
|||||||| |||||||| | |||||| |||||||||| || | ||| ||||||| ||
Sbjct 122704 AGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATGTTG 122645
Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489
|| ||||| || | || ||||| ||||| | |||||||| |||||||| ||||||
Sbjct 122644 GACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTCGGC 122585
Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGT 62549
|| || || | | | ||| || | | |||| | |||||| ||||| ||| |
Sbjct 122584 ATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTCTTTGAGAGAT 122525
Query 62550 TCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNN------------------A 62591
|||| | || |||| | || || || |
Sbjct 122524 GCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACATTTCA 122465
Query 62592 TATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTC 62651
|| || ||||| || | || | || || |||| || || || || || | |||
Sbjct 122464 TACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATATTTC 122405
Query 62652 TCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTA 62711
||||| |||| || ||| || | || |||| ||||| ||||||||||| |||
Sbjct 122404 TCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCGCTTG 122345
Query 62712 TTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62771
|| | |||| | || | ||||| || || | | || || || || || ||
Sbjct 122344 TTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAGGCATCAGCC 122285
Query 62772 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62831
|| || ||||| || || || || || | ||| | ||| |||||| |||||||||| ||
Sbjct 122284 AAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTTCCGGT 122225
Query 62832 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62891
|||||||| || || || || ||||| || | ||| | || || ||| |
Sbjct 122224 ATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACCTTGGTAATC 122165
Query 62892 TCCTTCAGTTTGAGAAAATCAAA--TC-GCCCATCTATTACAAACATGTTCAATGCAACA 62948
|| | || || | | || || || |||| | ||||| ||||||| || ||
Sbjct 122164 TCGTGAAGCTTTTCATAGTCGAAGGTCTTGTCATCCTTCACAAATCTGTTCAAAGCGACG 122105
Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008
|| |||||||| || || || || |||| | || || || | ||| || |||||
Sbjct 122104 GAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGGTGCAC 122045
Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068
||||| |||||||| ||||| ||||| | || ||| |||| || || |||||
Sbjct 122044 AGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGCATCT 121985
Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128
|| ||||| ||| | ||||| || ||||| ||||| || | |||| ||| ||| |
Sbjct 121984 TTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGAAGTAACAATCTCTTCCCAAAGA 121925
Query 63129 ACTCGAGCCTT 63139
| ||||||||
Sbjct 121924 GCGCGAGCCTT 121914
Score = 141 bits (156), Expect = 1e-28
Identities = 177/240 (74%), Gaps = 6/240 (3%)
Strand=Plus/Minus
Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
|||||| ||||| || | ||||| | ||||| |||||||| || || | ||| ||
Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074
Query 63722 GTACGTCTCAATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCAT 63778
||| || |||||||| | || || ||| ||| || || || || ||||| |||||
Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017
Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838
| || |||||| || | ||||||| ||| | ||| |||||||||||||| || ||
Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957
Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898
||| ||||| ||||| ||||| |||||||||| || || ||||| | |||| | |||||
Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|| ||||| | ||||||||| ||| ||||| ||||||| |||||| | ||||||||||
Sbjct 121771 GGGCACATAAGAGACCACTCTTTGTCTTCCTTTACTCGTTCCATAAACAAATCAGGAATC 121712
Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353
|| | ||| ||| ||||||| | | | ||| || || |||||||| || ||
Sbjct 121711 CACAAAGCGTAAAAAAGATCTCGAGCACGTTCTTCTTCTGAGCCGGTATTCTTCTTCAGT 121652
Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413
|| ||| | | ||||| | |||||| ||||| | ||| || || | | | |||||
Sbjct 121651 CTCAGAAACTCGAAGATATCTGCATGCCAAGGTTCGACGTAAATCGCAAAAGCACCAGGA 121592
Query 63414 CG 63415
||
Sbjct 121591 CG 121590
>seq5071
Length=368534
Score = 109 bits (120), Expect = 7e-19
Identities = 306/469 (65%), Gaps = 7/469 (1%)
Strand=Plus/Plus
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
|||| | |||||||| |||| || || || || || | ||| | ||||||
Sbjct 135093 ACATGAGGCATGCGAAGTCGCGATGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGT 135152
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693
||||| || ||||| || ||||||||||| | ||| ||||||| |||||| ||||| |
Sbjct 135153 GGGTGAGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTG 135212
Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--- 33750
| ||||| || || || || ||||| ||||| || | | ||| | || |||
Sbjct 135213 AGAAGAAAATGCCCTCCACAGCAGCGAAGGCGATCACACGTGTTCC--GAACGACGCGTT 135270
Query 33751 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808
||||| ||||| | ||||| || || |||||||| | || || | ||
Sbjct 135271 CTTGTCACCGATCCAACGAAGCGCCCAGTCAGCTTTCTTTTTGATGCATGGGAATTCTTG 135330
Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868
||||| || ||||| | ||| || ||| | ||| | || || | || ||||
Sbjct 135331 GATGGCGTTGAAGAGCTTGTTCTTCTCACGAGGATCGGTCACGTAGGCCTCAATCATCTT 135390
Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928
|||||||| || ||||| || | ||| || || || | |||||| | ||
Sbjct 135391 CGAGTACATTTCAGAGTGAATCCCCTCGACGGCGATTTGGAAGCTGTAGAACGAAAGGGC 135450
Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988
||| | |||| || ||| | || || || | ||||||||| || || |||||
Sbjct 135451 CTCCGGCATCTTGACCTCTTGAGTGAAACGATCGATGAGATTTTCATTGACGATGCCATC 135510
Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 34037
||||| || || ||||||||||| || ||| | | |||||||
Sbjct 135511 TGATGCTGCGAAGAATGCCAATACATGCGAGATGAAAAACTGTTCGTCT 135559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629771670551520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |