Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5716 179 5e-40 seq5071 109 7e-19 >seq5716 Length=132174 Score = 179 bits (198), Expect = 5e-40 Identities = 511/791 (65%), Gaps = 21/791 (3%) Strand=Plus/Minus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 |||||||| |||||||| | |||||| |||||||||| || | ||| ||||||| || Sbjct 122704 AGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATGTTG 122645 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 || ||||| || | || ||||| ||||| | |||||||| |||||||| |||||| Sbjct 122644 GACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTCGGC 122585 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGT 62549 || || || | | | ||| || | | |||| | |||||| ||||| ||| | Sbjct 122584 ATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTCTTTGAGAGAT 122525 Query 62550 TCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNN------------------A 62591 |||| | || |||| | || || || | Sbjct 122524 GCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACATTTCA 122465 Query 62592 TATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTC 62651 || || ||||| || | || | || || |||| || || || || || | ||| Sbjct 122464 TACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATATTTC 122405 Query 62652 TCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTA 62711 ||||| |||| || ||| || | || |||| ||||| ||||||||||| ||| Sbjct 122404 TCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCGCTTG 122345 Query 62712 TTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62771 || | |||| | || | ||||| || || | | || || || || || || Sbjct 122344 TTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAGGCATCAGCC 122285 Query 62772 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62831 || || ||||| || || || || || | ||| | ||| |||||| |||||||||| || Sbjct 122284 AAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTTCCGGT 122225 Query 62832 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62891 |||||||| || || || || ||||| || | ||| | || || ||| | Sbjct 122224 ATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACCTTGGTAATC 122165 Query 62892 TCCTTCAGTTTGAGAAAATCAAA--TC-GCCCATCTATTACAAACATGTTCAATGCAACA 62948 || | || || | | || || || |||| | ||||| ||||||| || || Sbjct 122164 TCGTGAAGCTTTTCATAGTCGAAGGTCTTGTCATCCTTCACAAATCTGTTCAAAGCGACG 122105 Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || |||||||| || || || || |||| | || || || | ||| || ||||| Sbjct 122104 GAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGGTGCAC 122045 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 ||||| |||||||| ||||| ||||| | || ||| |||| || || ||||| Sbjct 122044 AGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGCATCT 121985 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || ||||| ||| | ||||| || ||||| ||||| || | |||| ||| ||| | Sbjct 121984 TTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGAAGTAACAATCTCTTCCCAAAGA 121925 Query 63129 ACTCGAGCCTT 63139 | |||||||| Sbjct 121924 GCGCGAGCCTT 121914 Score = 141 bits (156), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| ||||| || | ||||| | ||||| |||||||| || || | ||| || Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074 Query 63722 GTACGTCTCAATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 ||| || |||||||| | || || ||| ||| || || || || ||||| ||||| Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 | || |||||| || | ||||||| ||| | ||| |||||||||||||| || || Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 ||| ||||| ||||| ||||| |||||||||| || || ||||| | |||| | ||||| Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | ||||||||| ||| ||||| ||||||| |||||| | |||||||||| Sbjct 121771 GGGCACATAAGAGACCACTCTTTGTCTTCCTTTACTCGTTCCATAAACAAATCAGGAATC 121712 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || | ||| ||| ||||||| | | | ||| || || |||||||| || || Sbjct 121711 CACAAAGCGTAAAAAAGATCTCGAGCACGTTCTTCTTCTGAGCCGGTATTCTTCTTCAGT 121652 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || ||| | | ||||| | |||||| ||||| | ||| || || | | | ||||| Sbjct 121651 CTCAGAAACTCGAAGATATCTGCATGCCAAGGTTCGACGTAAATCGCAAAAGCACCAGGA 121592 Query 63414 CG 63415 || Sbjct 121591 CG 121590 >seq5071 Length=368534 Score = 109 bits (120), Expect = 7e-19 Identities = 306/469 (65%), Gaps = 7/469 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| | |||||||| |||| || || || || || | ||| | |||||| Sbjct 135093 ACATGAGGCATGCGAAGTCGCGATGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGT 135152 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||||| || ||||| || ||||||||||| | ||| ||||||| |||||| ||||| | Sbjct 135153 GGGTGAGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTG 135212 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--- 33750 | ||||| || || || || ||||| ||||| || | | ||| | || ||| Sbjct 135213 AGAAGAAAATGCCCTCCACAGCAGCGAAGGCGATCACACGTGTTCC--GAACGACGCGTT 135270 Query 33751 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 ||||| ||||| | ||||| || || |||||||| | || || | || Sbjct 135271 CTTGTCACCGATCCAACGAAGCGCCCAGTCAGCTTTCTTTTTGATGCATGGGAATTCTTG 135330 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 ||||| || ||||| | ||| || ||| | ||| | || || | || |||| Sbjct 135331 GATGGCGTTGAAGAGCTTGTTCTTCTCACGAGGATCGGTCACGTAGGCCTCAATCATCTT 135390 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 |||||||| || ||||| || | ||| || || || | |||||| | || Sbjct 135391 CGAGTACATTTCAGAGTGAATCCCCTCGACGGCGATTTGGAAGCTGTAGAACGAAAGGGC 135450 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 ||| | |||| || ||| | || || || | ||||||||| || || ||||| Sbjct 135451 CTCCGGCATCTTGACCTCTTGAGTGAAACGATCGATGAGATTTTCATTGACGATGCCATC 135510 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 34037 ||||| || || ||||||||||| || ||| | | ||||||| Sbjct 135511 TGATGCTGCGAAGAATGCCAATACATGCGAGATGAAAAACTGTTCGTCT 135559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629771670551520