Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5716 129 8e-25 seq5071 102 1e-16 >seq5716 Length=132174 Score = 129 bits (142), Expect = 8e-25 Identities = 178/246 (72%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| ||||| || | ||||| | ||||| |||||||| || || | ||| || Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074 Query 66515 GTACGTCTCAATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCAT 66571 ||| || |||||||| | || || ||| ||| || || || || ||||| ||||| Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 | || |||||| || | ||||| | || | ||| |||||||||||||| || || Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 ||| ||||| ||||| ||||| |||||||||| || || ||||| | |||| | || || Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897 Query 66692 GAGTTT 66697 | ||| Sbjct 120896 CAATTT 120891 >seq5071 Length=368534 Score = 102 bits (112), Expect = 1e-16 Identities = 291/445 (65%), Gaps = 3/445 (1%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||| | |||||||| |||| ||||| || || || | ||| | ||||||| Sbjct 135093 ACATGAGGCATGCGAAGTCGCGATGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGT 135152 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 ||||| || ||||| || ||||||||||| | ||| ||||||| || || ||||| | Sbjct 135153 GGGTGAGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTG 135212 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCAC 36326 | |||||||| || || || || || ||||| || | | ||| | || || Sbjct 135213 AGAAGAAAATGCCCTCCACAGCAGCGAAGGCGATCACACGTGTTCCGAACGACGCGTTCT 135272 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 ||||| ||||| | ||||| || || |||||||| | || || | | | | Sbjct 135273 TGTCACCGATCCAACGAAGCGCCCAGTCAGCTTTCTTTTTGATGCATGGGAATTCTTGGA 135332 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 | || || ||||| | ||| || ||| | ||| | || || | ||||||| Sbjct 135333 TGGCGTTGAAGAGCTTGTTCTTCTCACGAGGATCGGTCACGTAGGCCTCAATCATCTTCG 135392 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 |||||||| || ||||| || | ||| ||||| || | |||||| | |||| Sbjct 135393 AGTACATTTCAGAGTGAATCCCCTCGACGGCGATTTGGAAGCTGTAGAACGAAAGGGCCT 135452 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 36566 | | |||| || ||| | || || || | ||||||||| || || || || Sbjct 135453 CCGGCATCTTGACCTCTTGAGTGAAACGATCGATGAGATTTTCATTGACGATGCCATCTG 135512 Query 36567 TGGCTGCAAAAAACGCCAATACATG 36591 ||||| || || ||||||||||| Sbjct 135513 ATGCTGCGAAGAATGCCAATACATG 135537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658124802748560