Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq1811 178 3e-40
>seq1811
Length=36858
Score = 178 bits (196), Expect = 3e-40
Identities = 549/835 (66%), Gaps = 22/835 (3%)
Strand=Plus/Plus
Query 8132 GGCGCTCCGGTTCTCACCGGCGCGGTGGCTGCAATGGCGGATGAGCCGTTTGATTATATC 8191
||||| |||| | ||| |||| |||| || ||| ||||| |||||||| | |||
Sbjct 22765 GGCGCCCCGGACATGGCCGCCGCGCTGGCGGCGTTGGGTGATGAACCGTTTGAATTCATC 22824
Query 8192 GGTCTGCCGTTCAACGACACGGCCTCCGTTAACACGCTGGTGACCGA-GATGAACGATAC 8250
||| ||| | | ||| |||||| | | || | |||| | ||| |||| |||||||
Sbjct 22825 TGTCAGCCCTGGAGCGATACGGCCACGCTCGACGC-CTGGAAAGCGACGATGGACGATAC 22883
Query 8251 CAGCGGTCGCTGGAGCTATGCGCGTCAGCTGTATGGTCATGTGTATACGGCAAAGACCGG 8310
||| |||||| || || ||||| ||||| ||||| || | || ||| |||
Sbjct 22884 GGCCGGGCGCTGGTCCTGGGCCAAGCAGCTCTATGGCCATGTTTACAGCGCCAAGCGCGG 22943
Query 8311 CACACTGTCAGAACTGGTGAACGCAGGT--GACCAGTTTAACCAGCAGCACATCACCCTG 8368
| | || |||||| ||| || | || | ||| | |||||||| || ||
Sbjct 22944 TAGCGTCGGCGAGCTGGTGGCCGCCGGCCGGGCCCGC--AACGACCAGCACATGACTTTG 23001
Query 8369 GCGGGGTACGAAAAAGAGA---CCCAGACGCCTGCCGACGAGCTGGCGGCAAGCCGTACC 8425
|| | |||| | | ||||| || || | || |||| || || ||||
Sbjct 23002 CACGGCTTCGAACGCGGGTTGCCCCAGCCGG-TGTGG--GAAGTGGCCGC--GCAGTACG 23056
Query 8426 --GCCCGTGCAGCGGTGTTTATCCGCAACGATCCGGCACGTCCCACGCAGACCGGTGAGC 8483
|| || | |||||||| ||| | ||| || | || || ||||||||||| |
Sbjct 23057 CGGCGCGAACGGCGGTGTTCATCAGTGCCGACCCCGGCCGGCCAACGCAGACCGGCACCC 23116
Query 8484 TGGTGGGTATGCTGCCTGCGCCGAAGGGGAAACGGTTCACGATGACCGAGCAGCAGACCC 8543
|| ||| || || || ||| | | || || || ||||||||| || | |
Sbjct 23117 TGTCGGGCATTGATCCGGCCCCGGCCAGCGACCGCTTTACACTGACCGAGCGTCAATCGC 23176
Query 8544 TGCTGTCTCATGGCGTGGCAACGGCGTATGTCGAAAGCGGGGTGCTGCGCATTCAGCGTG 8603
||||| | ||| | || || ||||| ||| |||| | ||||||||||| |
Sbjct 23177 TGCTGAGCTACGGCATTGCTACCGCGTACTACGAGGGCGGTTCGTACCGCATTCAGCGCG 23236
Query 8604 ATGTCACCACGTACAGGAAAAATGCTTACGGGGTTGCGGATAACAGCTACCTCGACAGCG 8663
|| || |||||| | || || ||||| || |||| ||| || |||||||
Sbjct 23237 CCGTGACGACGTACCAGCGCAACGCATACGGCCAGGCCGATACGTCCTATCTGGACAGCG 23296
Query 8664 AGACGCTGCATACCAGT--GCGTATGTACTGCGCAAACTG-AAATCCGTCATTACCAGTA 8720
|| |||||| |||||| ||| | || | ||||| ||| || |||| |||||||| |
Sbjct 23297 AGCCGCTGC--ACCAGTCGGCGCACGTGATTCGCAACCTGCAAGGCCGT-ATTACCAGCA 23353
Query 8721 AGTACGGGCGTCACAAGCTTGCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTG 8780
| ||||| ||||||||||| |||| ||| || ||| ||| || |||||||| || |
Sbjct 23354 AATACGGCCGTCACAAGCTGGCCAACGATGGCACCGCCTTCGGCGATGGTCAGGCCATCG 23413
Query 8781 TCACCCCGGCGGTAATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGG 8840
| || ||| ||| ||| || || ||| |||| ||||| | |||| ||||| || |
Sbjct 23414 TGACGCCGTTGGTGATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGCTGGAGCGCGCCG 23473
Query 8841 GGATCGTGGAAAACTACGAACTGTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCG 8900
| | || || ||| || ||||| ||||| ||||| | || ||||| || || | |
Sbjct 23474 GCCTGGTCGAGAACATGGAGCTGTTCAAGCAACACCTGATCGTTGAGCGCGACGCGAAAG 23533
Query 8901 TTCCGAACCGCCTGAACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGT 8955
|||||||| | |||||||||||| || || |||||| |||| ||
Sbjct 23534 ACCCGAACCGAATCGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGCTGCGCGT 23588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118506989415088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |