Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 138 2e-27
>seq5716
Length=132174
Score = 138 bits (152), Expect = 2e-27
Identities = 180/246 (73%), Gaps = 6/246 (2%)
Strand=Plus/Minus
Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393
|||||| ||||| || | ||||| | ||||| |||||||| || |||| ||| ||
Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074
Query 80394 GTACGTCTCAATAGCTGATTCTAT---ATCCCATTGATGAATTCCTACCGCGACACGCAT 80450
||| || |||||||| | ||| || ||| ||| || || || || ||||| |||||
Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017
Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510
| || |||||| || | ||||| | || | || ||||||||||||||||| ||
Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957
Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570
||| ||||| ||||| ||||| |||||||||| || || ||||| | |||| | || ||
Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897
Query 80571 GAGTTT 80576
| |||
Sbjct 120896 CAATTT 120891
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919
||||||||| ||||| || ||| | || || || | || ||| ||||| | ||
Sbjct 121817 TTCGAACTCCTCTCCATAACAATCAGGGAGACCTGGGCACTTGTGAGGGCACATAAGAGA 121758
Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979
||||||| || ||||||||||||| |||||| | |||||||||||| | ||| |||
Sbjct 121757 CCACTCTTTGTCTTCCTTTACTCGTTCCATAAACAAATCAGGAATCCACAAAGCGTAAAA 121698
Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039
||||||| | | | || || || |||||||| || || || ||| | |
Sbjct 121697 AAGATCTCGAGCACGTTCTTCTTCTGAGCCGGTATTCTTCTTCAGTCTCAGAAACTCGAA 121638
Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGC 80072
||||| | |||||| ||||| | ||| || ||
Sbjct 121637 GATATCTGCATGCCAAGGTTCGACGTAAATCGC 121605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718216420247760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |