Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5716 143 4e-29 >seq5716 Length=132174 Score = 143 bits (158), Expect = 4e-29 Identities = 503/792 (64%), Gaps = 23/792 (3%) Strand=Plus/Minus Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184 ||||||||||| ||||| | ||| || |||||||||| || | ||| ||||||| || Sbjct 122704 AGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATGTTG 122645 Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 71244 || ||||| || | || ||||| ||||| | |||||||| |||||||| |||||| Sbjct 122644 GACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTCGGC 122585 Query 71245 ATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAGAGA 71303 || || || | | ||||| || | | || || ||| |||||| ||||| ||||| Sbjct 122584 ATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTG-CTTCGCGATTTTCTCTTTGAGAGA 122526 Query 71304 TTCCCAATTCCAAAGATCCGATGGTACAAC------------------NNNNNNNNNNNN 71345 | |||| | || |||| | || || || Sbjct 122525 TGCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACATTTC 122466 Query 71346 NNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTT 71405 || || | || | || || |||| || ||||| || || | ||| Sbjct 122465 ATACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATATTT 122406 Query 71406 TTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTT 71465 || || ||||| || ||| || | ||| | || ||||| ||||| || || ||| Sbjct 122405 CTCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCGCTT 122346 Query 71466 ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 71525 || | |||| | || | ||||| || || | | || || || || || || Sbjct 122345 GTTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAGGCATCAGC 122286 Query 71526 TAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585 || || ||||| || || || || || | || | ||| ||||| |||||||||| || Sbjct 122285 CAAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTTCCGG 122226 Query 71586 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC 71645 |||||||| || || || || ||||| || | ||| | || || ||| | Sbjct 122225 TATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACCTTGGTAAT 122166 Query 71646 ATCCTTTAGTTTGAGAAAATCAAA--TC-TCCCATCTATTACAAACACGTTCAAGGCAAC 71702 || | || || | | || || || | |||| | ||||| |||||| || || Sbjct 122165 CTCGTGAAGCTTTTCATAGTCGAAGGTCTTGTCATCCTTCACAAATCTGTTCAAAGCGAC 122106 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 || |||||||| ||||| || || |||| | | || || | ||||| ||||| Sbjct 122105 GGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGGTGCA 122046 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 ||||| |||||||| ||||| ||||| | || ||| |||| || || ||||| Sbjct 122045 CAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGCATC 121986 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 || ||||| || | ||||| || ||||| ||||| || | |||| ||| ||| | Sbjct 121985 TTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGAAGTAACAATCTCTTCCCAAAG 121926 Query 71883 GACTCGAGCCTT 71894 | |||||||| Sbjct 121925 AGCGCGAGCCTT 121914 Score = 134 bits (148), Expect = 2e-26 Identities = 179/246 (73%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||| || | ||||| | ||||| |||||||| || |||| ||| || Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074 Query 72477 GTACGTCTCAATAGCTGATTCTAT---ATCCCATTGATGTATTCCTACCGCGACACGCAT 72533 ||| || |||||||| | ||| || ||| ||| || || || || ||||| ||||| Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017 Query 72534 TAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTC 72593 | || ||||| || | ||||| | || | || |||||||||||||| || || Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957 Query 72594 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 ||| ||||| ||||| ||||| |||||||||| || || ||||| | |||| | ||||| Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897 Query 72654 GAGTTT 72659 | ||| Sbjct 120896 CAATTT 120891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671090257173840