Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 143 4e-29
>seq5716
Length=132174
Score = 143 bits (158), Expect = 4e-29
Identities = 503/792 (64%), Gaps = 23/792 (3%)
Strand=Plus/Minus
Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184
||||||||||| ||||| | ||| || |||||||||| || | ||| ||||||| ||
Sbjct 122704 AGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATGTTG 122645
Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 71244
|| ||||| || | || ||||| ||||| | |||||||| |||||||| ||||||
Sbjct 122644 GACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTCGGC 122585
Query 71245 ATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAGAGA 71303
|| || || | | ||||| || | | || || ||| |||||| ||||| |||||
Sbjct 122584 ATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTG-CTTCGCGATTTTCTCTTTGAGAGA 122526
Query 71304 TTCCCAATTCCAAAGATCCGATGGTACAAC------------------NNNNNNNNNNNN 71345
| |||| | || |||| | || || ||
Sbjct 122525 TGCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACATTTC 122466
Query 71346 NNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTT 71405
|| || | || | || || |||| || ||||| || || | |||
Sbjct 122465 ATACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATATTT 122406
Query 71406 TTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTT 71465
|| || ||||| || ||| || | ||| | || ||||| ||||| || || |||
Sbjct 122405 CTCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCGCTT 122346
Query 71466 ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 71525
|| | |||| | || | ||||| || || | | || || || || || ||
Sbjct 122345 GTTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAGGCATCAGC 122286
Query 71526 TAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585
|| || ||||| || || || || || | || | ||| ||||| |||||||||| ||
Sbjct 122285 CAAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTTCCGG 122226
Query 71586 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC 71645
|||||||| || || || || ||||| || | ||| | || || ||| |
Sbjct 122225 TATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACCTTGGTAAT 122166
Query 71646 ATCCTTTAGTTTGAGAAAATCAAA--TC-TCCCATCTATTACAAACACGTTCAAGGCAAC 71702
|| | || || | | || || || | |||| | ||||| |||||| || ||
Sbjct 122165 CTCGTGAAGCTTTTCATAGTCGAAGGTCTTGTCATCCTTCACAAATCTGTTCAAAGCGAC 122106
Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762
|| |||||||| ||||| || || |||| | | || || | ||||| |||||
Sbjct 122105 GGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGGTGCA 122046
Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822
||||| |||||||| ||||| ||||| | || ||| |||| || || |||||
Sbjct 122045 CAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGCATC 121986
Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882
|| ||||| || | ||||| || ||||| ||||| || | |||| ||| ||| |
Sbjct 121985 TTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGAAGTAACAATCTCTTCCCAAAG 121926
Query 71883 GACTCGAGCCTT 71894
| ||||||||
Sbjct 121925 AGCGCGAGCCTT 121914
Score = 134 bits (148), Expect = 2e-26
Identities = 179/246 (73%), Gaps = 6/246 (2%)
Strand=Plus/Minus
Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476
|||||| ||||| || | ||||| | ||||| |||||||| || |||| ||| ||
Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074
Query 72477 GTACGTCTCAATAGCTGATTCTAT---ATCCCATTGATGTATTCCTACCGCGACACGCAT 72533
||| || |||||||| | ||| || ||| ||| || || || || ||||| |||||
Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017
Query 72534 TAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTC 72593
| || ||||| || | ||||| | || | || |||||||||||||| || ||
Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957
Query 72594 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653
||| ||||| ||||| ||||| |||||||||| || || ||||| | |||| | |||||
Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897
Query 72654 GAGTTT 72659
| |||
Sbjct 120896 CAATTT 120891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671090257173840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |