Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq4364 89.7 5e-13
seq871 82.4 8e-11
>seq4364
Length=177085
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||| || || |||||||||||| | |||| ||||||||| || || ||
Sbjct 156950 GTCGATTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCG 157009
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| ||| |||||||| ||||| |||||||||||||| || || ||
Sbjct 157010 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 157069
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||||| || ||||| | || | ||||||||| || | ||
Sbjct 157070 ACGTTCTCAATGGTGTCCGAACCCTCGACTTCCAGGGTGATCGTCTTGCCAGTGAGGGTC 157129
Query 143168 TTTACGAATATTTGCAT 143184
|| ||||| || |||||
Sbjct 157130 TTCACGAAGATCTGCAT 157146
>seq871
Length=2590
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||| ||||| |||||||| ||| | | || | ||||||||| || || ||
Sbjct 695 GTCGATTCCTTTTGGATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCG 636
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| ||| |||||||| || || || ||||||||||| || || |||
Sbjct 635 GCGAAGATCAAACGCTGCTGATCAGGGGGAATACCTTCTTTGTCCTGGATCTTCGCCTTT 576
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||| | ||| ||||| | || | |||||| ||||| | ||
Sbjct 575 ACGTTCTCGATGCTGTCAGAACCTTCCACTTCCAGGGTGATCGTCTTCCCGGTGAGGGTC 516
Query 143168 TTTACGAATATTTGCATAGC 143187
|| ||||| || ||||| ||
Sbjct 515 TTCACGAAGATCTGCATTGC 496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506977425974880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |