Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq5071 143 4e-29
seq5716 84.2 3e-11
>seq5071
Length=368534
Score = 143 bits (158), Expect = 4e-29
Identities = 389/588 (66%), Gaps = 17/588 (3%)
Strand=Plus/Minus
Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189
|| || ||||| | ||||| ||||| || | || ||||| |||||||| || |||||
Sbjct 135546 TTCATCTCGCATGTATTGGCATTCTTCGCAGCATCAGATGGCATCGTCAATGAAAATCTC 135487
Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGG---TGTCGTGCTTTTACGGATTC 125246
| || ||| |||||||| | | || || |||| | |||| || || | |||
Sbjct 135486 ATCGATCGTTTCACTCAAGAGGTCAAGATGCCGGAGGCCCTTTCGTTCT---ACAGCTTC 135430
Query 125247 CAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306
|||||| | ||| | ||||| ||||||||||| | ||||||| ||| |
Sbjct 135429 CAAATCGCCGTCGAGGGGATTCACTCTGAAATGTACTCGAAGATGATTGAGGCCTACGTG 135370
Query 125307 CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGT 125366
|||||| | || ||| |||||| ||||| ||| | | || | ||
Sbjct 135369 ACCGATCCTCGTGAGAAGAACAAGCTCTTCAACGCCATCCAAGAATTCCCATGCATCAAA 135310
Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACA-G 125425
|| || ||| | |||| | |||| ||||||| |||| | || | |||| || ||| |
Sbjct 135309 AAGAAAGCTGACTGGGCGCTTCGTTGGATCGGTGACAAGAACGCGTCGTTCG-GAACACG 135251
Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485
|| | || ||||| || || |||||||| ||||| || || || || ||||| ||
Sbjct 135250 TGTGATCGCCTTCGCTGCTGTGGAGGGCATTTTCTTCTCAGGATCGTTCGCTGCCATATT 135191
Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545
||| | || ||||| || |||||||| || || || ||||| ||||| | || || ||
Sbjct 135190 CTGGTTGAAAAAGCGTGGTCTCATGCCTGGCCTCACCCACAGCAACGAACTCATTTCCCG 135131
Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605
|| || |||||||| | ||||| | ||| | || | ||| || || | ||
Sbjct 135130 GGATGAAGGCCTACATCGCGACTTCG-CATGC--CTCATGTACAAGTACCT---TGATGA 135077
Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665
| | | | | | | ||| | || | || |||| | || ||||| | || || |
Sbjct 135076 G---AAACCGAACCAAGAAGAAGTAAACATCATTATCCGAGAGGCCGTAACCATCGAGAA 135020
Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713
|||| | | ||| ||||||| || || ||||||||| ||||||||
Sbjct 135019 GGAGTATTTGACCCAATCCCTTCCTGTGGACATGATTGGGATGAACTG 134972
>seq5716
Length=132174
Score = 84.2 bits (92), Expect = 3e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 97141 AAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGG 97200
||||||| || ||| || || || | || || | || ||| | | || || ||
Sbjct 121888 AAGAGGGTCGCTACAAGAAGCGCGTGAAGGCTCGCGCTCTTTGGGAAGAGATTGTTACTT 121947
Query 97201 CTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCA 97260
| ||| | || || |||||||| ||||| || ||||| ||| | ||||| || |
Sbjct 121948 CGCAGATCGAAACCGGAACTCCTTACATGCTTTACAAAGATGCATGCAATCGAAAGTCTA 122007
Query 97261 ACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACG 97320
|||| | ||||| || |||||| |||| ||||||||||| ||||| || |||||
Sbjct 122008 ACCAGAAGAATTTGGGAACGATCAAGTGCTCAAATCTGTGCACCGAAATAGTGCAGTACT 122067
Query 97321 CCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361
| || || || || || |||||| |||||| || |||
Sbjct 122068 CGTCCCCAGATGAAGTCGCTGTTTGCAATCTGGCCTCCGTC 122108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741005158257840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |