Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5071 143 4e-29 seq5716 84.2 3e-11 >seq5071 Length=368534 Score = 143 bits (158), Expect = 4e-29 Identities = 389/588 (66%), Gaps = 17/588 (3%) Strand=Plus/Minus Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 || || ||||| | ||||| ||||| || | || ||||| |||||||| || ||||| Sbjct 135546 TTCATCTCGCATGTATTGGCATTCTTCGCAGCATCAGATGGCATCGTCAATGAAAATCTC 135487 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGG---TGTCGTGCTTTTACGGATTC 125246 | || ||| |||||||| | | || || |||| | |||| || || | ||| Sbjct 135486 ATCGATCGTTTCACTCAAGAGGTCAAGATGCCGGAGGCCCTTTCGTTCT---ACAGCTTC 135430 Query 125247 CAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 |||||| | ||| | ||||| ||||||||||| | ||||||| ||| | Sbjct 135429 CAAATCGCCGTCGAGGGGATTCACTCTGAAATGTACTCGAAGATGATTGAGGCCTACGTG 135370 Query 125307 CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGT 125366 |||||| | || ||| |||||| ||||| ||| | | || | || Sbjct 135369 ACCGATCCTCGTGAGAAGAACAAGCTCTTCAACGCCATCCAAGAATTCCCATGCATCAAA 135310 Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACA-G 125425 || || ||| | |||| | |||| ||||||| |||| | || | |||| || ||| | Sbjct 135309 AAGAAAGCTGACTGGGCGCTTCGTTGGATCGGTGACAAGAACGCGTCGTTCG-GAACACG 135251 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485 || | || ||||| || || |||||||| ||||| || || || || ||||| || Sbjct 135250 TGTGATCGCCTTCGCTGCTGTGGAGGGCATTTTCTTCTCAGGATCGTTCGCTGCCATATT 135191 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||| | || ||||| || |||||||| || || || ||||| ||||| | || || || Sbjct 135190 CTGGTTGAAAAAGCGTGGTCTCATGCCTGGCCTCACCCACAGCAACGAACTCATTTCCCG 135131 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605 || || |||||||| | ||||| | ||| | || | ||| || || | || Sbjct 135130 GGATGAAGGCCTACATCGCGACTTCG-CATGC--CTCATGTACAAGTACCT---TGATGA 135077 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 | | | | | | | ||| | || | || |||| | || ||||| | || || | Sbjct 135076 G---AAACCGAACCAAGAAGAAGTAAACATCATTATCCGAGAGGCCGTAACCATCGAGAA 135020 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713 |||| | | ||| ||||||| || || ||||||||| |||||||| Sbjct 135019 GGAGTATTTGACCCAATCCCTTCCTGTGGACATGATTGGGATGAACTG 134972 >seq5716 Length=132174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 97141 AAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGG 97200 ||||||| || ||| || || || | || || | || ||| | | || || || Sbjct 121888 AAGAGGGTCGCTACAAGAAGCGCGTGAAGGCTCGCGCTCTTTGGGAAGAGATTGTTACTT 121947 Query 97201 CTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCA 97260 | ||| | || || |||||||| ||||| || ||||| ||| | ||||| || | Sbjct 121948 CGCAGATCGAAACCGGAACTCCTTACATGCTTTACAAAGATGCATGCAATCGAAAGTCTA 122007 Query 97261 ACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACG 97320 |||| | ||||| || |||||| |||| ||||||||||| ||||| || ||||| Sbjct 122008 ACCAGAAGAATTTGGGAACGATCAAGTGCTCAAATCTGTGCACCGAAATAGTGCAGTACT 122067 Query 97321 CCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361 | || || || || || |||||| |||||| || ||| Sbjct 122068 CGTCCCCAGATGAAGTCGCTGTTTGCAATCTGGCCTCCGTC 122108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741005158257840