Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq1811 170 5e-38 >seq1811 Length=36858 Score = 170 bits (188), Expect = 5e-38 Identities = 279/400 (70%), Gaps = 4/400 (1%) Strand=Plus/Plus Query 8780 CGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACAGC 8839 || |||||||| | | ||||||||| | || || || || ||| |||| | Sbjct 23224 CGCATTCAGCGCGCCGTGACGACGTACCAGCGCAACGCATACGGCCAGGCCGATACGTCC 23283 Query 8840 TACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATCTG 8897 || || ||||||||| ||||||| ||||| || | ||| | ||| ||| || Sbjct 23284 TATCTGGACAGCGAGCCGCTGCA--CCAGTCGGCGCACGTGATTCGCAACCTGCAAGGCC 23341 Query 8898 TTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTG 8957 ||||||||| |||||||| || || || || || || ||||| || ||||| || Sbjct 23342 GTATTACCAGCAAATACGGCCGTCACAAGCTGGCCAACGATGGCACCGCCTTCGGCGATG 23401 Query 8958 GTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGA 9017 |||||||||| || ||||| || |||||||| ||||||| | | || || || Sbjct 23402 GTCAGGCCATCGTGACGCCGTTGGTGATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGC 23461 Query 9018 TGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTGGAGC 9077 ||||||| | ||| | || || ||| | || |||||| ||||||| ||||| || |||| Sbjct 23462 TGGAGCGCGCCGGCCTGGTCGAGAACATGGAGCTGTTCAAGCAACACCTGATCGTTGAGC 23521 Query 9078 GTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGT 9137 | ||||||| || ||||||| | | |||||||| ||||| ||| ||||| ||| Sbjct 23522 GCGACGCGAAAGACCCGAACCGAATCGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGC 23581 Query 9138 TACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177 | || || | || || | |||||||| |||||||| Sbjct 23582 TGCGCGTCCTGGCCCTGTCGTATCAGTTCCGGCTGCAGTA 23621 Score = 149 bits (164), Expect = 2e-31 Identities = 445/679 (66%), Gaps = 16/679 (2%) Strand=Plus/Plus Query 10326 CAGTTTGCGAACGACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCC 10385 ||||| || | ||||| || |||||||| ||||| || || || |||||| ||||| Sbjct 24871 CAGTTCGCCGAGGACGCGGTAAAAATGGGCGTGGCTTTCGACCAGACGGCCGAACAGTCC 24930 Query 10386 GGTCAGATGATGGCGCAGTGGCGGACAGCGTT-CAGACTGACGCAGGAAGACGTGGTTGT 10444 || | ||||||||| ||||||| || ||||| || | ||| || || ||||| Sbjct 24931 GGGGAAATGATGGCGAAGTGGCGCACCGCGTTTCACA-TGAGCCAAACCGAAGTGGTGAC 24989 Query 10445 CCTGGCCGATAAAATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAAATTTC 10504 ||||||||| || ||||||||||| | ||| | |||| |||| | | | | |||| || Sbjct 24990 CCTGGCCGACAAGATCAACTATCTAGCGAACAACGGCGCGGCCAGTACCGCGCAAATCTC 25049 Query 10505 TGATATCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAAT 10564 | |||||||| || || ||| | |||| || ||||| || | || | | Sbjct 25050 GGCCATCGTGACAGCCATCGGCCCGTTGGGCGAGGTGGCCGGGGTCAACGCTGGGCAGCT 25109 Query 10565 TGCCGCGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCGGAGATAGCCTCCACCGG 10624 || |||||||| | | | |||||| |||| | | |||| | || ||||||| Sbjct 25110 CGCGGCGATGGGGTCGGCTCTGGCCGGGGTGGGAATCGGCCAGGAGGTGGCAGCCACCGG 25169 Query 10625 CATCAAAAACTTCATGCTGTCGTTAACCGCAGGTAATTCGGCAACCAAAGCCCAGAAACA 10684 |||||||||||| |||||| || | | ||| || | |||| || || | |||||| | Sbjct 25170 CATCAAAAACTTTATGCTGACGCTGAGCGCCGGCACGGCGGCTACTAAGTCGCAGAAAGA 25229 Query 10685 GGC---TATGGCTTTCCTGAAGCTGAATCCCCGGAAACTCGCTGAGGATATGCAAAAGGA 10741 || | ||| | || |||| || | | || || | ||| ||||| | || Sbjct 25230 AGCGTTCAAGGCGT---TGCGGCTGGATGCTAGCCAAATCTCCAAGGGCATGCAGACAGA 25286 Query 10742 TTCGCACGGGGCCATGCTGAA---GGTGCTGGACTCGCTCGCGAAAGT-GCCAAAAGCTA 10797 | || || || | | || || ||| | || || || || | |||||| | Sbjct 25287 T---AGCGAGGGCACGATTAACCGCGTCCTGATGACCCTGGCCAAGGTCGAGAAAAGC-A 25342 Query 10798 AACAGGCCGCCGTCATGAATGCGCTGTTTGGCAAGGAGTCACTTAGCGCGATTGCCCCGC 10857 | ||||| || ||| ||| |||||||||||||||| | | || || || |||| Sbjct 25343 AGCAGGCGGCGGTCCTGACGAACTTGTTTGGCAAGGAGTCGGTAGGGGCTATCGCGCCGC 25402 Query 10858 TGCTGACCAACCTGGATTTGTTACGCACCAATTTTGATCGTGTGGCTGATGCCCAGGAAT 10917 || |||| ||||| || | | | | || ||| | || | ||| | | || | Sbjct 25403 TGTTGACGAACCTAGACACGCTGCAGAAAAACTTTAAAAACGTCGGTGAAGGCGGCGAGT 25462 Query 10918 ATGGCGGCTCGATGCAGAAGGAATACGCATCCCGCGCGGCCACAACAGAAAACCAGCTGG 10977 |||||||||| | |||||| | ||||||| || || || |||||| ||| Sbjct 25463 TCTCCGGCTCGATGTTGGCTGAATACACGGCCCGCGCCGCGACCACGGAAAACTCCCTGC 25522 Query 10978 TTCTGCTGAAAAACAGCGT 10996 |||||| | ||| |||| Sbjct 25523 AGCTGCTGCAGAACCGCGT 25541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128346307712188