Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_004313.1
Length=40149
Score E
Sequences producing significant alignments: (Bits) Value
seq1811 170 5e-38
>seq1811
Length=36858
Score = 170 bits (188), Expect = 5e-38
Identities = 279/400 (70%), Gaps = 4/400 (1%)
Strand=Plus/Plus
Query 8780 CGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACAGC 8839
|| |||||||| | | ||||||||| | || || || || ||| |||| |
Sbjct 23224 CGCATTCAGCGCGCCGTGACGACGTACCAGCGCAACGCATACGGCCAGGCCGATACGTCC 23283
Query 8840 TACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATCTG 8897
|| || ||||||||| ||||||| ||||| || | ||| | ||| ||| ||
Sbjct 23284 TATCTGGACAGCGAGCCGCTGCA--CCAGTCGGCGCACGTGATTCGCAACCTGCAAGGCC 23341
Query 8898 TTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTG 8957
||||||||| |||||||| || || || || || || ||||| || ||||| ||
Sbjct 23342 GTATTACCAGCAAATACGGCCGTCACAAGCTGGCCAACGATGGCACCGCCTTCGGCGATG 23401
Query 8958 GTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGA 9017
|||||||||| || ||||| || |||||||| ||||||| | | || || ||
Sbjct 23402 GTCAGGCCATCGTGACGCCGTTGGTGATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGC 23461
Query 9018 TGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTGGAGC 9077
||||||| | ||| | || || ||| | || |||||| ||||||| ||||| || ||||
Sbjct 23462 TGGAGCGCGCCGGCCTGGTCGAGAACATGGAGCTGTTCAAGCAACACCTGATCGTTGAGC 23521
Query 9078 GTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGT 9137
| ||||||| || ||||||| | | |||||||| ||||| ||| ||||| |||
Sbjct 23522 GCGACGCGAAAGACCCGAACCGAATCGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGC 23581
Query 9138 TACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177
| || || | || || | |||||||| ||||||||
Sbjct 23582 TGCGCGTCCTGGCCCTGTCGTATCAGTTCCGGCTGCAGTA 23621
Score = 149 bits (164), Expect = 2e-31
Identities = 445/679 (66%), Gaps = 16/679 (2%)
Strand=Plus/Plus
Query 10326 CAGTTTGCGAACGACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCC 10385
||||| || | ||||| || |||||||| ||||| || || || |||||| |||||
Sbjct 24871 CAGTTCGCCGAGGACGCGGTAAAAATGGGCGTGGCTTTCGACCAGACGGCCGAACAGTCC 24930
Query 10386 GGTCAGATGATGGCGCAGTGGCGGACAGCGTT-CAGACTGACGCAGGAAGACGTGGTTGT 10444
|| | ||||||||| ||||||| || ||||| || | ||| || || |||||
Sbjct 24931 GGGGAAATGATGGCGAAGTGGCGCACCGCGTTTCACA-TGAGCCAAACCGAAGTGGTGAC 24989
Query 10445 CCTGGCCGATAAAATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAAATTTC 10504
||||||||| || ||||||||||| | ||| | |||| |||| | | | | |||| ||
Sbjct 24990 CCTGGCCGACAAGATCAACTATCTAGCGAACAACGGCGCGGCCAGTACCGCGCAAATCTC 25049
Query 10505 TGATATCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAAT 10564
| |||||||| || || ||| | |||| || ||||| || | || | |
Sbjct 25050 GGCCATCGTGACAGCCATCGGCCCGTTGGGCGAGGTGGCCGGGGTCAACGCTGGGCAGCT 25109
Query 10565 TGCCGCGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCGGAGATAGCCTCCACCGG 10624
|| |||||||| | | | |||||| |||| | | |||| | || |||||||
Sbjct 25110 CGCGGCGATGGGGTCGGCTCTGGCCGGGGTGGGAATCGGCCAGGAGGTGGCAGCCACCGG 25169
Query 10625 CATCAAAAACTTCATGCTGTCGTTAACCGCAGGTAATTCGGCAACCAAAGCCCAGAAACA 10684
|||||||||||| |||||| || | | ||| || | |||| || || | |||||| |
Sbjct 25170 CATCAAAAACTTTATGCTGACGCTGAGCGCCGGCACGGCGGCTACTAAGTCGCAGAAAGA 25229
Query 10685 GGC---TATGGCTTTCCTGAAGCTGAATCCCCGGAAACTCGCTGAGGATATGCAAAAGGA 10741
|| | ||| | || |||| || | | || || | ||| ||||| | ||
Sbjct 25230 AGCGTTCAAGGCGT---TGCGGCTGGATGCTAGCCAAATCTCCAAGGGCATGCAGACAGA 25286
Query 10742 TTCGCACGGGGCCATGCTGAA---GGTGCTGGACTCGCTCGCGAAAGT-GCCAAAAGCTA 10797
| || || || | | || || ||| | || || || || | |||||| |
Sbjct 25287 T---AGCGAGGGCACGATTAACCGCGTCCTGATGACCCTGGCCAAGGTCGAGAAAAGC-A 25342
Query 10798 AACAGGCCGCCGTCATGAATGCGCTGTTTGGCAAGGAGTCACTTAGCGCGATTGCCCCGC 10857
| ||||| || ||| ||| |||||||||||||||| | | || || || ||||
Sbjct 25343 AGCAGGCGGCGGTCCTGACGAACTTGTTTGGCAAGGAGTCGGTAGGGGCTATCGCGCCGC 25402
Query 10858 TGCTGACCAACCTGGATTTGTTACGCACCAATTTTGATCGTGTGGCTGATGCCCAGGAAT 10917
|| |||| ||||| || | | | | || ||| | || | ||| | | || |
Sbjct 25403 TGTTGACGAACCTAGACACGCTGCAGAAAAACTTTAAAAACGTCGGTGAAGGCGGCGAGT 25462
Query 10918 ATGGCGGCTCGATGCAGAAGGAATACGCATCCCGCGCGGCCACAACAGAAAACCAGCTGG 10977
|||||||||| | |||||| | ||||||| || || || |||||| |||
Sbjct 25463 TCTCCGGCTCGATGTTGGCTGAATACACGGCCCGCGCCGCGACCACGGAAAACTCCCTGC 25522
Query 10978 TTCTGCTGAAAAACAGCGT 10996
|||||| | ||| ||||
Sbjct 25523 AGCTGCTGCAGAACCGCGT 25541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128346307712188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |