Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq616 145 2e-29
seq5007 134 3e-26
seq611 104 5e-17
>seq616
Length=1528
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||| ||| || ||||| | || ||||| ||||| || || ||||| || | ||| | |
Sbjct 148 AGCCGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGA 207
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| || || || || ||||| || ||||| || | ||| || || || || |||||||||
Sbjct 208 CCATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCT 267
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|| ||||| ||||| ||||| |||||||| | |||||| || ||||| || |||
Sbjct 268 TTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCGACCTCCAGGGTA 327
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| ||||| || || || || || ||||||||
Sbjct 328 ATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||| ||| || || || | || ||||| ||||| ||||| ||||| || || || | |
Sbjct 882 AGCCGAAGGACGAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGA 941
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || || ||||| || || || | | ||| || || || || |||||||||
Sbjct 942 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCT 1001
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| || || || || || | || ||| ||| || || || ||
Sbjct 1002 TTATCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTG 1061
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| ||||| | || || ||||| ||||||||
Sbjct 1062 ATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1099
Score = 109 bits (120), Expect = 1e-18
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || ||||||||||| || || ||||| || || || | || ||
Sbjct 382 AGGACGAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 441
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || ||||| || ||||| || | ||| || || || || |||||||| || ||
Sbjct 442 TCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 501
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGT 104526
|| ||||| || || || || || | ||| || | || ||| || || | || || ||
Sbjct 502 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC-CGAGCCTTCCACTTCCAAGGTGATCGT 560
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| || || || ||||| || || |||||||||
Sbjct 561 CTTGCCGGTGAGCGTTTTGACGAAGATCTGCATT 594
>seq5007
Length=89527
Score = 134 bits (148), Expect = 3e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
||||||| | || | ||| || ||||| | || || ||||||||||| || ||||| |
Sbjct 22030 TTCCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCGG 22089
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
| || || | ||||| || ||||| ||||| || || || || | ||| || || ||||
Sbjct 22090 AGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAG 22149
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510
| || ||||| || || || ||||| || || || || || | ||||||| || |
Sbjct 22150 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCAA 22209
Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| || || || ||||| || || || ||||| ||||| ||||||||
Sbjct 22210 CCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCAT 22258
>seq611
Length=17302
Score = 104 bits (114), Expect = 5e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||| ||| || || || | || ||||||||||| || || ||||| || | ||| | |
Sbjct 5963 AGCCGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGA 6022
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| || || || || || || || ||||| || | ||| || || || || ||||||||
Sbjct 6023 CCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGGGGAATTCCTTCC 6082
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
||||| || || || || || || || || | || || ||| ||||| || ||
Sbjct 6083 TTATCTTGGATTTTGGCCTTCACGTTCTCAATCGTGTCAGAGCCTTCGACCTCAAGAGTG 6142
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
|| ||||| || || || ||||| || || |||||
Sbjct 6143 ATCGTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151312335128472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |