Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq616 145 2e-29 seq5007 134 3e-26 seq611 104 5e-17 >seq616 Length=1528 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| ||| || ||||| | || ||||| ||||| || || ||||| || | ||| | | Sbjct 148 AGCCGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGA 207 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || ||||| || ||||| || | ||| || || || || ||||||||| Sbjct 208 CCATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCT 267 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| ||||| |||||||| | |||||| || ||||| || ||| Sbjct 268 TTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCGACCTCCAGGGTA 327 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || || || || |||||||| Sbjct 328 ATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| ||| || || || | || ||||| ||||| ||||| ||||| || || || | | Sbjct 882 AGCCGAAGGACGAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGA 941 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || ||||| || || || | | ||| || || || || ||||||||| Sbjct 942 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCT 1001 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || || || || || | || ||| ||| || || || || Sbjct 1002 TTATCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTG 1061 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| | || || ||||| |||||||| Sbjct 1062 ATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1099 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| || || ||||| || || || | || || Sbjct 382 AGGACGAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 441 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| || ||||| || | ||| || || || || |||||||| || || Sbjct 442 TCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 501 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || || || || | ||| || | || ||| || || | || || || Sbjct 502 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC-CGAGCCTTCCACTTCCAAGGTGATCGT 560 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || ||||| || || ||||||||| Sbjct 561 CTTGCCGGTGAGCGTTTTGACGAAGATCTGCATT 594 >seq5007 Length=89527 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 ||||||| | || | ||| || ||||| | || || ||||||||||| || ||||| | Sbjct 22030 TTCCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCGG 22089 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || || | ||||| || ||||| ||||| || || || || | ||| || || |||| Sbjct 22090 AGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAG 22149 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || ||||| || || || ||||| || || || || || | ||||||| || | Sbjct 22150 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCAA 22209 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||| || || || ||||| ||||| |||||||| Sbjct 22210 CCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCAT 22258 >seq611 Length=17302 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| ||| || || || | || ||||||||||| || || ||||| || | ||| | | Sbjct 5963 AGCCGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGA 6022 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || || || ||||| || | ||| || || || || |||||||| Sbjct 6023 CCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGGGGAATTCCTTCC 6082 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || || || || || || || || | || || ||| ||||| || || Sbjct 6083 TTATCTTGGATTTTGGCCTTCACGTTCTCAATCGTGTCAGAGCCTTCGACCTCAAGAGTG 6142 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || ||||| || || || ||||| || || ||||| Sbjct 6143 ATCGTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151312335128472