Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq611 120 3e-22 seq616 116 3e-21 seq871 109 5e-19 seq4364 107 2e-18 seq5007 96.9 3e-15 seq3368 87.8 2e-12 seq311 86.0 6e-12 >seq611 Length=17302 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| || ||| || |||| | ||| |||||||| Sbjct 5128 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTG 5187 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 ||||||| | ||||| | | ||||| ||||| ||||| ||||| ||||| | ||||| Sbjct 5188 TTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTT 5247 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| | | || || | || || |||| |||||||||||||| || Sbjct 5248 GGCCTTCACGTTCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGT 5307 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||||||||||| Sbjct 5308 GAGCGTCTTCACGAAGATCTGCATGC 5333 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 ||| |||||||| || | ||| ||||| | ||| | ||| |||| ||| ||||| Sbjct 5362 AGTGGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGGCCATCTTCCAACTGCTTTCC 5421 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | | ||||| |||| ||||||||||| ||||| ||||| || || | || || ||||| Sbjct 5422 GGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTGGCCTT 5481 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| ||| || || | || || |||| |||||||||||||| || || || Sbjct 5482 CACGTTCTCGATGGTATCCGAACCTTCAACCTCAAGGGTGATGGTTTTTCCGGTGAGCGT 5541 Query 94990 TTTCACAAAGATCTGCATGC 95009 ||| || ||||||||||||| Sbjct 5542 TTTGACGAAGATCTGCATGC 5561 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| |||||| | ||||| | | ||||||||||| ||||| ||||| || Sbjct 9708 ATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGAATTCCTTCCTT 9767 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || ||| ||||| | ||||| || | ||||| Sbjct 9768 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACCTCGAGGGTGAT 9827 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || |||||||| ||||| ||||| Sbjct 9828 GGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 9863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 5/212 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || | ||| || ||||| || | ||| || ||| | || || || ||| || Sbjct 4639 CAAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG--AGAGGGTGCGACCATCTTC 4696 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| ||||| | || || |||| ||||| ||||| ||||| ||||| ||||| | Sbjct 4697 CAGCTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTG 4756 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| ||| ||| ||||| | ||||| || | ||||| || || Sbjct 4757 GATCTTGGCCTTCACGTTCTCGATGGTGTCCGATCCTTCGACCTCGAGTGTGATCGTCTT 4816 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | || ||||| ||||||||||||| Sbjct 4817 GCCAGTCAAGGTCTTCACGAAGATCTGCATGC 4848 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | | ||||| ||||| ||||| ||||| ||||| | || || ||||| | Sbjct 5817 CAAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCA 5876 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||||| | ||||| || | ||||| || || ||||| | || | Sbjct 5877 CGTTCTCAATCGTGTCAGAGCCTTCGACCTCGAGTGTGATCGTCTTGCCAGTCAAGGTCT 5936 Query 94992 TCACAAAGATCTGCATGC 95009 |||||||||||||||||| Sbjct 5937 TCACAAAGATCTGCATGC 5954 >seq616 Length=1528 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || |||| | |||||| ||||| |||||| Sbjct 1131 GTTGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCG 1190 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| |||| ||||| ||||||||||| ||||| ||||| | || || || ||| Sbjct 1191 GCGAAGATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTG 1250 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| ||||||| | || || |||| || || || ||||| || || || Sbjct 1251 ACATTCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATCGTCTTTCCGGTGAGCGTC 1310 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 1311 TTGACGAAGATCTGCATGC 1329 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| |||||| | ||||| |||| ||||| ||||| ||||| |||||||| Sbjct 944 ATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTT 1003 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| ||| | | ||||| | | || || || | ||||| Sbjct 1004 ATCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGAT 1063 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| | || ||||||||||||||||||| Sbjct 1064 GGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGC 1101 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || ||| || |||| |||||| ||||| |||||| Sbjct 169 GTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGCTGCTTTCCG 228 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || || | | ||||| ||||| ||||| ||||||||||| | || || || ||| Sbjct 229 GCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 288 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| || |||| | ||||| || | || || || || ||||| || || Sbjct 289 ACATTTTCGATGGTATCAGAGCCCTCGACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTC 348 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 349 TTCACGAAGATCTGCATGC 367 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| |||| ||||||||||||||||| ||||| ||||| | || || ||||| | Sbjct 736 CAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTCA 795 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||| | || || || | |||||||| || ||||| || || | Sbjct 796 CGTTCTCAATCGTGTCGGATCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTGAGGGTCT 855 Query 94992 TCACAAAGATCTGCATGC 95009 |||||||||||||||||| Sbjct 856 TCACAAAGATCTGCATGC 873 >seq871 Length=2590 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||||||| ||||||||||| | ||| || ||| | | || | || || ||||| Sbjct 701 TGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGC 642 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 |||||| | ||||| || | |||||||| || ||||||||||||||||| | || || Sbjct 641 TTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGGAATACCTTCTTTGTCCTGGATCTTC 582 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| ||| |||||| || || || | ||||| || || || || Sbjct 581 GCCTTTACGTTCTCGATGCTGTCAGAACCTTCCACTTCCAGGGTGATCGTCTTCCCGGTG 522 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||||||||| Sbjct 521 AGGGTCTTCACGAAGATCTGCAT 499 >seq4364 Length=177085 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| |||||| | |||| || || ||||| |||||| Sbjct 156950 GTCGATTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCG 157009 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| || | ||||||||||||||||| ||||||||||| | || || ||||| Sbjct 157010 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 157069 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | ||||| || | ||||| || || ||||| || || Sbjct 157070 ACGTTCTCAATGGTGTCCGAACCCTCGACTTCCAGGGTGATCGTCTTGCCAGTGAGGGTC 157129 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 157130 TTCACGAAGATCTGCAT 157146 >seq5007 Length=89527 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || |||||| | ||||| | | ||||| |||||||| || ||||| ||| Sbjct 22332 TCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTG 22391 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| ||| || || | | ||||| || | |||||| Sbjct 22392 TCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCTTCGACCTCGAGCGTGATC 22451 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || ||||||||||||||||||||| Sbjct 22452 GTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATG 22487 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || |||||| | ||||| | | ||||| |||||||| || ||||| ||| Sbjct 22104 TCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTG 22163 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| ||| || || | | || || || | |||||| Sbjct 22164 TCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCAACCTCGAGCGTGATC 22223 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || |||||||||||||||||||||| Sbjct 22224 GTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGC 22260 >seq3368 Length=489 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| || | ||||||||||| ||||| ||||| || || | || || ||||||| Sbjct 299 CAAAGATCAAGCGCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGA 240 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||||| | ||||| || | |||||||| || || || || || | Sbjct 239 CATTTTCGATGGTGTCAGAGCCCTCGACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCT 180 Query 94992 TCACAAAGATCTGCAT 95007 |||||||||| ||||| Sbjct 179 TCACAAAGATTTGCAT 164 >seq311 Length=48857 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| | ||||| || | ||||||||||||||||| || || || Sbjct 16760 TCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTA 16701 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| ||| |||||| ||||| || | || ||| Sbjct 16700 TCCTGGATCTTGGCCTTCACGTTCTCGATGCTGTCAGAAGCTTCGACTTCGAGGGTAATG 16641 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||||||||| Sbjct 16640 GTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 16606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258508364240