Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq611 120 3e-22
seq616 116 3e-21
seq871 109 5e-19
seq4364 107 2e-18
seq5007 96.9 3e-15
seq3368 87.8 2e-12
seq311 86.0 6e-12
>seq611
Length=17302
Score = 120 bits (132), Expect = 3e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||| | ||| || ||||| || | ||| || ||| || |||| | ||| ||||||||
Sbjct 5128 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTG 5187
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
||||||| | ||||| | | ||||| ||||| ||||| ||||| ||||| | |||||
Sbjct 5188 TTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTT 5247
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||||| ||| | | || || | || || |||| |||||||||||||| ||
Sbjct 5248 GGCCTTCACGTTCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGT 5307
Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009
|| || ||||| |||||||||||||
Sbjct 5308 GAGCGTCTTCACGAAGATCTGCATGC 5333
Score = 113 bits (124), Expect = 4e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869
||| |||||||| || | ||| ||||| | ||| | ||| |||| ||| |||||
Sbjct 5362 AGTGGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGGCCATCTTCCAACTGCTTTCC 5421
Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929
| | ||||| |||| ||||||||||| ||||| ||||| || || | || || |||||
Sbjct 5422 GGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTGGCCTT 5481
Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989
||| ||| || || | || || |||| |||||||||||||| || || ||
Sbjct 5482 CACGTTCTCGATGGTATCCGAACCTTCAACCTCAAGGGTGATGGTTTTTCCGGTGAGCGT 5541
Query 94990 TTTCACAAAGATCTGCATGC 95009
||| || |||||||||||||
Sbjct 5542 TTTGACGAAGATCTGCATGC 5561
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| ||||| |||||| | ||||| | | ||||||||||| ||||| ||||| ||
Sbjct 9708 ATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGAATTCCTTCCTT 9767
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || ||||| || ||| ||||| | ||||| || | |||||
Sbjct 9768 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACCTCGAGGGTGAT 9827
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || ||||| || |||||||| ||||| |||||
Sbjct 9828 GGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 9863
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/212 (71%), Gaps = 5/212 (2%)
Strand=Plus/Plus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857
|||| || | ||| || ||||| || | ||| || ||| | || || || ||| ||
Sbjct 4639 CAAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG--AGAGGGTGCGACCATCTTC 4696
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| ||||| | || || |||| ||||| ||||| ||||| ||||| ||||| |
Sbjct 4697 CAGCTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTG 4756
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| ||| ||| ||||| | ||||| || | ||||| || ||
Sbjct 4757 GATCTTGGCCTTCACGTTCTCGATGGTGTCCGATCCTTCGACCTCGAGTGTGATCGTCTT 4816
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| | || ||||| |||||||||||||
Sbjct 4817 GCCAGTCAAGGTCTTCACGAAGATCTGCATGC 4848
Score = 82.4 bits (90), Expect = 7e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| | | ||||| ||||| ||||| ||||| ||||| | || || ||||| |
Sbjct 5817 CAAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCA 5876
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| | | ||||||| | ||||| || | ||||| || || ||||| | || |
Sbjct 5877 CGTTCTCAATCGTGTCAGAGCCTTCGACCTCGAGTGTGATCGTCTTGCCAGTCAAGGTCT 5936
Query 94992 TCACAAAGATCTGCATGC 95009
||||||||||||||||||
Sbjct 5937 TCACAAAGATCTGCATGC 5954
>seq616
Length=1528
Score = 116 bits (128), Expect = 3e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| || ||||| || | ||| || ||| || |||| | |||||| ||||| ||||||
Sbjct 1131 GTTGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCG 1190
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
| ||||| |||| ||||| ||||||||||| ||||| ||||| | || || || |||
Sbjct 1191 GCGAAGATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTG 1250
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| ||| ||||||| | || || |||| || || || ||||| || || ||
Sbjct 1251 ACATTCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATCGTCTTTCCGGTGAGCGTC 1310
Query 94991 TTCACAAAGATCTGCATGC 95009
|| || |||||||||||||
Sbjct 1311 TTGACGAAGATCTGCATGC 1329
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| |||||| | ||||| |||| ||||| ||||| ||||| ||||||||
Sbjct 944 ATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTT 1003
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| ||| | | ||||| | | || || || | |||||
Sbjct 1004 ATCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGAT 1063
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||| || ||||| | || |||||||||||||||||||
Sbjct 1064 GGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGC 1101
Score = 102 bits (112), Expect = 7e-17
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| |||||||| || | ||| || ||| || |||| |||||| ||||| ||||||
Sbjct 169 GTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGCTGCTTTCCG 228
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
| || || | | ||||| ||||| ||||| ||||||||||| | || || || |||
Sbjct 229 GCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 288
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| ||| || |||| | ||||| || | || || || || ||||| || ||
Sbjct 289 ACATTTTCGATGGTATCAGAGCCCTCGACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTC 348
Query 94991 TTCACAAAGATCTGCATGC 95009
||||| |||||||||||||
Sbjct 349 TTCACGAAGATCTGCATGC 367
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| |||| ||||||||||||||||| ||||| ||||| | || || ||||| |
Sbjct 736 CAAAGATCAATCGCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTCA 795
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| | | ||||| | || || || | |||||||| || ||||| || || |
Sbjct 796 CGTTCTCAATCGTGTCGGATCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTGAGGGTCT 855
Query 94992 TCACAAAGATCTGCATGC 95009
||||||||||||||||||
Sbjct 856 TCACAAAGATCTGCATGC 873
>seq871
Length=2590
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||||||| ||||||||||| | ||| || ||| | | || | || || |||||
Sbjct 701 TGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGC 642
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|||||| | ||||| || | |||||||| || ||||||||||||||||| | || ||
Sbjct 641 TTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGGAATACCTTCTTTGTCCTGGATCTTC 582
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
||||| ||| ||| |||||| || || || | ||||| || || || ||
Sbjct 581 GCCTTTACGTTCTCGATGCTGTCAGAACCTTCCACTTCCAGGGTGATCGTCTTCCCGGTG 522
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||| |||||||||||
Sbjct 521 AGGGTCTTCACGAAGATCTGCAT 499
>seq4364
Length=177085
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| |||||||| || | ||| |||||| | |||| || || ||||| ||||||
Sbjct 156950 GTCGATTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCG 157009
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
| ||||| || | ||||||||||||||||| ||||||||||| | || || |||||
Sbjct 157010 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 157069
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
||| | | ||||| | ||||| || | ||||| || || ||||| || ||
Sbjct 157070 ACGTTCTCAATGGTGTCCGAACCCTCGACTTCCAGGGTGATCGTCTTGCCAGTGAGGGTC 157129
Query 94991 TTCACAAAGATCTGCAT 95007
||||| |||||||||||
Sbjct 157130 TTCACGAAGATCTGCAT 157146
>seq5007
Length=89527
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| || || |||||| | ||||| | | ||||| |||||||| || ||||| |||
Sbjct 22332 TCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTG 22391
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| ||| || || | | ||||| || | ||||||
Sbjct 22392 TCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCTTCGACCTCGAGCGTGATC 22451
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || || || |||||||||||||||||||||
Sbjct 22452 GTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATG 22487
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| || || |||||| | ||||| | | ||||| |||||||| || ||||| |||
Sbjct 22104 TCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTG 22163
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| ||| || || | | || || || | ||||||
Sbjct 22164 TCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCAACCTCGAGCGTGATC 22223
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || || ||||||||||||||||||||||
Sbjct 22224 GTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGC 22260
>seq3368
Length=489
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| || | ||||||||||| ||||| ||||| || || | || || |||||||
Sbjct 299 CAAAGATCAAGCGCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGA 240
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| ||| ||||||| | ||||| || | |||||||| || || || || || |
Sbjct 239 CATTTTCGATGGTGTCAGAGCCCTCGACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCT 180
Query 94992 TCACAAAGATCTGCAT 95007
|||||||||| |||||
Sbjct 179 TCACAAAGATTTGCAT 164
>seq311
Length=48857
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || ||||| |||||| | ||||| || | ||||||||||||||||| || || ||
Sbjct 16760 TCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTA 16701
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| ||| |||||| ||||| || | || |||
Sbjct 16700 TCCTGGATCTTGGCCTTCACGTTCTCGATGCTGTCAGAAGCTTCGACTTCGAGGGTAATG 16641
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || ||||| |||||||||||
Sbjct 16640 GTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 16606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448258508364240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |