Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq447 161 2e-35 seq3871 159 5e-35 seq3866 154 2e-33 seq4894 145 1e-30 seq3781 132 8e-27 seq4975 87.8 3e-13 >seq447 Length=50433 Score = 161 bits (178), Expect = 2e-35 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 45836 CTTCGCGATAACATCCAAGGAATCACCAAGCCCGCTATCCGCCGTCTCGCTCGTCGTGGC 45777 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || | |||| ||||| | ||| | ||| | ||| ||| Sbjct 45776 GGAGTGAAGCGCATCTCCGGCCTCATCTACGAAGAAACTCGCGGCGTTCTCAAGTCGTTC 45717 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| || || |||| ||||| || ||| |||||||| || || ||||| ||| Sbjct 45716 CTCGAGGGAGTCATCCGCGATGCGGTCACCTACTGTGAGCACGCCAAGCGCAAGACCGTC 45657 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| | ||||| || |||| || ||||| | | | ||||||||||| Sbjct 45656 ACCGCAATGGACGTTGTCTACGCGCTGAAGCGCCAAGGAAGAACCCTCTATGGTTTTGG 45598 >seq3871 Length=6530 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | || || || |||||||| |||||||||||||| || || Sbjct 2034 CGCCAAGCGCCATCGTAAGGTGCTCCGCGACAACATCCAGGGAATCACCAAGCCCGCGAT 2093 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||| |||||||| ||||| |||| || | |||| ||||||| Sbjct 2094 CCGTCGTCTCGCCCGTCGCGGTGGAGTGAAGCGCATCTCCGGCCTCATCTACGAAGAGAC 2153 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||| || ||| |||| || || || ||| ||| Sbjct 2154 CCGCGGAGTCCTCAAGTCGTTCCTCGAGGGCGTCATCCGCGACGCCGTCACCTACTGCGA 2213 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || | || |||||||| Sbjct 2214 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGTCAAGG 2273 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | || ||||| ||| ||||| Sbjct 2274 CAGAACCCTCTACGGTTTCGGAGGTTAA 2301 >seq3866 Length=46864 Score = 154 bits (170), Expect = 2e-33 Identities = 181/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| ||||||||||| ||||| || ||||| || || Sbjct 12438 CGCCAAGCGCCATCGCAAGGTGCTTCGCGATAACATCCAGGGAATTACGAAGCCCGCAAT 12497 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| ||||| ||||| |||| || | |||| ||||| | Sbjct 12498 CCGTCGTCTCGCTCGTCGTGGAGGAGTTAAGCGCATCTCCGGTCTCATCTACGAAGAAAC 12557 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||| ||| ||| ||| || | || ||| ||| Sbjct 12558 CCGTGGTGTGCTCAAGTCGTTCCTGGAGAGCGTCATCAGAGACTCGGTCACCTACTGCGA 12617 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || |||||||| |||||| | ||||| |||| || || |||| |||||||| Sbjct 12618 ACATGCGAAGCGTAAGACCGTCACCGCGATGGACGTCGTTTACGCTCTGAAGCGTCAAGG 12677 Query 16672 CCGTA 16676 ||||| Sbjct 12678 CCGTA 12682 >seq4894 Length=131860 Score = 145 bits (160), Expect = 1e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || ||||||||||| |||||||| ||||| || || Sbjct 250 CGCCAAGCGCCATCGCAAGGTGCTCCGTGATAACATCCAGGGAATCACGAAGCCCGCCAT 309 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || ||||| ||||| || ||||| |||| || | |||| ||||||| Sbjct 310 CCGCCGTCTCGCCCGTCGAGGTGGTGTGAAGCGCATCTCCGGCCTCATCTACGAAGAGAC 369 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| |||||| || ||| |||| || || || ||| ||| Sbjct 370 CCGCGGTGTCCTCAAGTCGTTCCTCGAGGGCGTCATCCGCGACGCCGTCACCTACTGCGA 429 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 430 GCACGCCAAGCGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGG 489 >seq3781 Length=46925 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | ||||| ||||||||||| |||||||| ||||| ||||| Sbjct 46056 CGCCAAGCGCCATCGAAAGGTGCTTCGCGATAACATCCAGGGAATCACGAAGCCTGCTAT 46115 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || ||||| || ||||| ||| |||| || | |||| ||||| | Sbjct 46116 CCGCCGTCTTGCCCGACGTGGAGGTGTCAAACGTATCTCCGGTCTTATCTACGAAGAAAC 46175 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| || ||| | || || | ||||| | ||| ||| Sbjct 46176 TCGAGGTGTCTTGAAAGCTTTTCTCGAAGGAGTGATTCGGGATGCCGTAACCTACTGCGA 46235 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| | ||||| |||| || || |||| || ||||| Sbjct 46236 GCACGCCAAGCGCAAGACCGTCACCGCGATGGACGTCGTTTACGCTCTGAAGCGCCAAGG 46295 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| || || ||||| Sbjct 46296 AAGAACTCTCTATGGATTCGGTGGTTAA 46323 >seq4975 Length=32627 Score = 87.8 bits (96), Expect = 3e-13 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | | || || ||||||||||| |||||||| ||||| || || Sbjct 31637 CGCCAAGCGCCATCGTAAAGTGCTCCGCGATAACATCCAGGGAATCACGAAGCCCGCCAT 31578 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||||| || || |||||||| || | || || ||| |||| ||||| | Sbjct 31577 TCGCCGACTCGCTCGCCGCGGAGGAGTCAAACGCATTTCCGGTTTGATCTACGAAGAAGT 31518 Query 16552 TCGTGATGTTTTGAAG 16567 || | || |||||| Sbjct 31517 ACGAGGCGTGTTGAAG 31502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069865932962