Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq4743 183 2e-41
seq611 102 5e-17
seq245 98.7 7e-16
>seq4743
Length=155390
Score = 183 bits (202), Expect = 2e-41
Identities = 229/314 (73%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC 6230
|| ||||||||||||||||| ||| | ||||| |||||||| ||||| || |||
Sbjct 109820 CTCAACGTAAATCGTAATGTTCTCGACCCCTTCTATCGCTACAAGATGCCTCGGATCATG 109879
Query 6231 GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTC 6290
|| |||||||| || || |||||||| || || || ||||| | || ||| ||| |
Sbjct 109880 GCGAAGGTCGAAGGAAAAGGAAACGGCATCAAGACTGTCATCGCTAATATGGTTGACATT 109939
Query 6291 GCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGC 6350
|||||| |||||| || || | ||||||||||| || || || || |||||||||||
Sbjct 109940 GCTAAGTCGCTCGAGCGACCACCAACCTACCCGACCAAGTACTTTGGATGCGAACTTGGA 109999
Query 6351 GCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCT 6410
||||| ||| | | || |||| || || |||| ||||| ||||| || || |
Sbjct 110000 GCTCAAACGAACATCGACAACAAGAATGAACGCTATATCGTGAACGGTGATCACGACGCG 110059
Query 6411 GCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470
|| || |||||||| | ||||| || || |||||||| || || || || | |||
Sbjct 110060 GCTAAACTGCAGGATATCCTTGATGGATTCATTCGCAAATTCGTTCTTTGCACCGCGTGC 110119
Query 6471 GATAACCCGGAGAC 6484
||||| ||||| ||
Sbjct 110120 GATAATCCGGAAAC 110133
>seq611
Length=17302
Score = 102 bits (112), Expect = 5e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
|| ||||| |||||| || || ||||| || |||||| || | || || | |||
Sbjct 5129 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGT 5188
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|||||||| || || ||||| || || || | ||| | ||||| |||||| |||||
Sbjct 5189 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTG 5248
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
|||||| |||| | ||||| || |||||| || | || || ||||| || ||
Sbjct 5249 GCCTTCACGTTCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGTG 5308
Query 38295 AAGGTTTTCACGAATATCTGCATG 38318
| || |||||||| |||||||||
Sbjct 5309 AGCGTCTTCACGAAGATCTGCATG 5332
>seq245
Length=5303
Score = 98.7 bits (108), Expect = 7e-16
Identities = 71/82 (87%), Gaps = 5/82 (6%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
|||||||||||||||||||| ||||||||||||||||||||| | || ||||||||
Sbjct 4612 AAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATAGTAGATAGTGATAGTGGGAATCTCGT 4553
Query 25957 TAATCCTTTCATGCGCGTCACT 25978
||| || |||||||||||| ||
Sbjct 4552 TAAACCATTCATGCGCGTCCCT 4531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334923384626054
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |