Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4743 183 2e-41 seq611 102 5e-17 seq245 98.7 7e-16 >seq4743 Length=155390 Score = 183 bits (202), Expect = 2e-41 Identities = 229/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC 6230 || ||||||||||||||||| ||| | ||||| |||||||| ||||| || ||| Sbjct 109820 CTCAACGTAAATCGTAATGTTCTCGACCCCTTCTATCGCTACAAGATGCCTCGGATCATG 109879 Query 6231 GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTC 6290 || |||||||| || || |||||||| || || || ||||| | || ||| ||| | Sbjct 109880 GCGAAGGTCGAAGGAAAAGGAAACGGCATCAAGACTGTCATCGCTAATATGGTTGACATT 109939 Query 6291 GCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGC 6350 |||||| |||||| || || | ||||||||||| || || || || ||||||||||| Sbjct 109940 GCTAAGTCGCTCGAGCGACCACCAACCTACCCGACCAAGTACTTTGGATGCGAACTTGGA 109999 Query 6351 GCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCT 6410 ||||| ||| | | || |||| || || |||| ||||| ||||| || || | Sbjct 110000 GCTCAAACGAACATCGACAACAAGAATGAACGCTATATCGTGAACGGTGATCACGACGCG 110059 Query 6411 GCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470 || || |||||||| | ||||| || || |||||||| || || || || | ||| Sbjct 110060 GCTAAACTGCAGGATATCCTTGATGGATTCATTCGCAAATTCGTTCTTTGCACCGCGTGC 110119 Query 6471 GATAACCCGGAGAC 6484 ||||| ||||| || Sbjct 110120 GATAATCCGGAAAC 110133 >seq611 Length=17302 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || ||||| |||||| || || ||||| || |||||| || | || || | ||| Sbjct 5129 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGT 5188 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || ||||| || || || | ||| | ||||| |||||| ||||| Sbjct 5189 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTG 5248 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| |||| | ||||| || |||||| || | || || ||||| || || Sbjct 5249 GCCTTCACGTTCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGTG 5308 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | || |||||||| ||||||||| Sbjct 5309 AGCGTCTTCACGAAGATCTGCATG 5332 >seq245 Length=5303 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/82 (87%), Gaps = 5/82 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||| ||||||||||||||||||||| | || |||||||| Sbjct 4612 AAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATAGTAGATAGTGATAGTGGGAATCTCGT 4553 Query 25957 TAATCCTTTCATGCGCGTCACT 25978 ||| || |||||||||||| || Sbjct 4552 TAAACCATTCATGCGCGTCCCT 4531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923384626054