Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 129 7e-25
seq5071 109 7e-19
>seq5716
Length=132174
Score = 129 bits (142), Expect = 7e-25
Identities = 178/246 (72%), Gaps = 6/246 (2%)
Strand=Plus/Minus
Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525
|||||| ||||| || | ||||| | ||||| |||||||| || || | ||| ||
Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074
Query 63526 GTACGTCTCAATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCAT 63582
||| || |||||||| | || || ||| ||| || || || || ||||| |||||
Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017
Query 63583 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63642
| || |||||| || | ||||| | || | ||| |||||||||||||| || ||
Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957
Query 63643 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702
||| ||||| ||||| ||||| |||||||||| || || ||||| | |||| | || ||
Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897
Query 63703 GAGTTT 63708
| |||
Sbjct 120896 CAATTT 120891
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
||||||||| ||||| || || || || || || | | || ||||| | ||
Sbjct 121817 TTCGAACTCCTCTCCATAACAATCAGGGAGACCTGGGCACTTGTGAGGGCACATAAGAGA 121758
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||||||| ||| ||||| ||||||| |||||| | |||||||||||| | ||| |||
Sbjct 121757 CCACTCTTTGTCTTCCTTTACTCGTTCCATAAACAAATCAGGAATCCACAAAGCGTAAAA 121698
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
||||||| | | | ||| || || |||||||| || || || ||| | |
Sbjct 121697 AAGATCTCGAGCACGTTCTTCTTCTGAGCCGGTATTCTTCTTCAGTCTCAGAAACTCGAA 121638
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219
||||| | |||||| ||||| | ||| || || | | | ||||| ||
Sbjct 121637 GATATCTGCATGCCAAGGTTCGACGTAAATCGCAAAAGCACCAGGACG 121590
>seq5071
Length=368534
Score = 109 bits (120), Expect = 7e-19
Identities = 306/469 (65%), Gaps = 7/469 (1%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
|||| | |||||||| |||| ||||| || || || | ||| | |||||||
Sbjct 135093 ACATGAGGCATGCGAAGTCGCGATGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGT 135152
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772
||||| || ||||| || ||||||||||| | ||| ||||||| || || ||||| |
Sbjct 135153 GGGTGAGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTG 135212
Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--- 32829
| |||||||| || || || || || ||||| || | | ||| | || |||
Sbjct 135213 AGAAGAAAATGCCCTCCACAGCAGCGAAGGCGATCACACGTGTTCC--GAACGACGCGTT 135270
Query 32830 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887
||||| ||||| | ||||| || || |||||||| | || || | | |
Sbjct 135271 CTTGTCACCGATCCAACGAAGCGCCCAGTCAGCTTTCTTTTTGATGCATGGGAATTCTTG 135330
Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947
|| || || ||||| | ||| || ||| | ||| | || || | |||||||
Sbjct 135331 GATGGCGTTGAAGAGCTTGTTCTTCTCACGAGGATCGGTCACGTAGGCCTCAATCATCTT 135390
Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007
|||||||| || ||||| || | ||| ||||| || | |||||| | ||
Sbjct 135391 CGAGTACATTTCAGAGTGAATCCCCTCGACGGCGATTTGGAAGCTGTAGAACGAAAGGGC 135450
Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067
||| | |||| || ||| | || || || | ||||||||| || || || ||
Sbjct 135451 CTCCGGCATCTTGACCTCTTGAGTGAAACGATCGATGAGATTTTCATTGACGATGCCATC 135510
Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 33116
||||| || || ||||||||||| || ||| | | |||||||
Sbjct 135511 TGATGCTGCGAAGAATGCCAATACATGCGAGATGAAAAACTGTTCGTCT 135559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633585792386400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |