Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5716 129 7e-25 seq5071 109 7e-19 >seq5716 Length=132174 Score = 129 bits (142), Expect = 7e-25 Identities = 178/246 (72%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| ||||| || | ||||| | ||||| |||||||| || || | ||| || Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074 Query 63526 GTACGTCTCAATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCAT 63582 ||| || |||||||| | || || ||| ||| || || || || ||||| ||||| Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017 Query 63583 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63642 | || |||||| || | ||||| | || | ||| |||||||||||||| || || Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957 Query 63643 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 ||| ||||| ||||| ||||| |||||||||| || || ||||| | |||| | || || Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897 Query 63703 GAGTTT 63708 | ||| Sbjct 120896 CAATTT 120891 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| ||||| || || || || || || | | || ||||| | || Sbjct 121817 TTCGAACTCCTCTCCATAACAATCAGGGAGACCTGGGCACTTGTGAGGGCACATAAGAGA 121758 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||||||| ||| ||||| ||||||| |||||| | |||||||||||| | ||| ||| Sbjct 121757 CCACTCTTTGTCTTCCTTTACTCGTTCCATAAACAAATCAGGAATCCACAAAGCGTAAAA 121698 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||||| | | | ||| || || |||||||| || || || ||| | | Sbjct 121697 AAGATCTCGAGCACGTTCTTCTTCTGAGCCGGTATTCTTCTTCAGTCTCAGAAACTCGAA 121638 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 ||||| | |||||| ||||| | ||| || || | | | ||||| || Sbjct 121637 GATATCTGCATGCCAAGGTTCGACGTAAATCGCAAAAGCACCAGGACG 121590 >seq5071 Length=368534 Score = 109 bits (120), Expect = 7e-19 Identities = 306/469 (65%), Gaps = 7/469 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | |||||||| |||| ||||| || || || | ||| | ||||||| Sbjct 135093 ACATGAGGCATGCGAAGTCGCGATGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGT 135152 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 ||||| || ||||| || ||||||||||| | ||| ||||||| || || ||||| | Sbjct 135153 GGGTGAGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTG 135212 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--- 32829 | |||||||| || || || || || ||||| || | | ||| | || ||| Sbjct 135213 AGAAGAAAATGCCCTCCACAGCAGCGAAGGCGATCACACGTGTTCC--GAACGACGCGTT 135270 Query 32830 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 ||||| ||||| | ||||| || || |||||||| | || || | | | Sbjct 135271 CTTGTCACCGATCCAACGAAGCGCCCAGTCAGCTTTCTTTTTGATGCATGGGAATTCTTG 135330 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947 || || || ||||| | ||| || ||| | ||| | || || | ||||||| Sbjct 135331 GATGGCGTTGAAGAGCTTGTTCTTCTCACGAGGATCGGTCACGTAGGCCTCAATCATCTT 135390 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 |||||||| || ||||| || | ||| ||||| || | |||||| | || Sbjct 135391 CGAGTACATTTCAGAGTGAATCCCCTCGACGGCGATTTGGAAGCTGTAGAACGAAAGGGC 135450 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 ||| | |||| || ||| | || || || | ||||||||| || || || || Sbjct 135451 CTCCGGCATCTTGACCTCTTGAGTGAAACGATCGATGAGATTTTCATTGACGATGCCATC 135510 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 33116 ||||| || || ||||||||||| || ||| | | ||||||| Sbjct 135511 TGATGCTGCGAAGAATGCCAATACATGCGAGATGAAAAACTGTTCGTCT 135559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633585792386400