Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq611 102 7e-17
seq4364 96.9 3e-15
seq616 95.1 1e-14
seq871 93.3 4e-14
>seq611
Length=17302
Score = 102 bits (112), Expect = 7e-17
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061
|| || || || || || | ||||| || | ||||| | || || || ||||||
Sbjct 6177 CAGATCTTCGTCAAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGAC 6118
Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121
|| || ||| ||||| |||||| || || ||||| ||||| || ||||| |||
Sbjct 6117 ACGATTGAGAACGTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAG 6058
Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181
|| | ||||| |||||||| || | || |||| ||||||| || ||| ||||| ||
Sbjct 6057 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACATC 5998
Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||||||||| || || | || || |||| | |||||
Sbjct 5997 CAGAAAGAATCCACCCTCCACCTGGTCCTTCGGCTCCGCGGAGG 5954
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || |||| || | ||||| || ||
Sbjct 4618 ATGCAGATTTTCGTGAAGACGCTCACTGGCAAGACCATTACCCTGGAAGTCGAAGGATCG 4559
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||||||| ||||| || ||| ||||| ||||| ||||| || ||||||
Sbjct 4558 GACACTATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAA 4499
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || ||||| || || | || |||| |||||| || || |||||
Sbjct 4498 CAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGACTACAAC 4439
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || ||||| ||||| ||
Sbjct 4438 ATCCAGAAGGAATCAACGCTCCA 4416
>seq4364
Length=177085
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| | || || || | ||||| | ||||| ||| ||
Sbjct 157147 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTC 157088
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || ||| ||||| || ||| ||||||||||| ||||| || || ||
Sbjct 157087 GGACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 157028
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || ||||| || || | ||||| | ||||||| | |||||||||
Sbjct 157027 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTACAA 156968
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| || || ||| | || ||
Sbjct 156967 CATCCAGAAGGAATCGACCCTCCATCTCGTACT 156935
>seq616
Length=1528
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || | || || | || || ||| |||
Sbjct 365 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTCT 306
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || ||||| |||| |||| || | || ||||||||||| ||||| || ||
Sbjct 305 GATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCCCCAGA 250
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | ||||| ||||| || || | || |||| ||||||| || ||| ||
Sbjct 249 CCAGCAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTA 190
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||| || || || ||||| || || ||| | || || |||| | |||||
Sbjct 189 CAACATCCAGAAGGAATCGACCCTCCATCTCGTCCTTCGGCTCCGCGGAGG 139
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || || | ||||| || | ||||| | |||||||| ||
Sbjct 594 AATGCAGATCTTCGTCAAAACGCTCACCGGCAAGACGATCACCTTGGAAGTGGAAGGCTC 535
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| |||||| ||||| || ||| ||||| ||||| || || || |||||
Sbjct 534 GGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 475
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | ||||| ||||| || || | || |||| ||||| | || |||||
Sbjct 474 GCAGCGCCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCGGACTACAA 415
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||||||||| || ||| | || ||
Sbjct 414 CATCCAGAAAGAATCCACCCTCCATCTCGTCCT 382
>seq871
Length=2590
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056
||||||| || || || ||||| | ||||| || | ||||| | |||||||| |
Sbjct 497 CAATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATCACCCTGGAAGTGGAAGGTT 556
Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||| |||||| | ||| || ||| ||||||||||| ||||| ||||| |
Sbjct 557 CTGACAGCATCGAGAACGTAAAGGCGAAGATCCAGGACAAAGAAGGTATTCCCCCTGATC 616
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || || ||||| || || | ||||| | || || | ||| ||||
Sbjct 617 AGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCAACGACTACA 676
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || ||||| ||||| || | ||| | |||||
Sbjct 677 ACATCCAAAAGGAATCGACTTTGCATCTCGTGCT 710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433297189566710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |