Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq611 102 7e-17 seq4364 96.9 3e-15 seq616 95.1 1e-14 seq871 93.3 4e-14 >seq611 Length=17302 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || || || || | ||||| || | ||||| | || || || |||||| Sbjct 6177 CAGATCTTCGTCAAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGAC 6118 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || || ||| ||||| |||||| || || ||||| ||||| || ||||| ||| Sbjct 6117 ACGATTGAGAACGTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAG 6058 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || | ||||| |||||||| || | || |||| ||||||| || ||| ||||| || Sbjct 6057 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACATC 5998 Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || | || || |||| | ||||| Sbjct 5997 CAGAAAGAATCCACCCTCCACCTGGTCCTTCGGCTCCGCGGAGG 5954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || |||| || | ||||| || || Sbjct 4618 ATGCAGATTTTCGTGAAGACGCTCACTGGCAAGACCATTACCCTGGAAGTCGAAGGATCG 4559 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| ||||| || ||| ||||| ||||| ||||| || |||||| Sbjct 4558 GACACTATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAA 4499 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | || |||| |||||| || || ||||| Sbjct 4498 CAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGACTACAAC 4439 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || ||||| ||||| || Sbjct 4438 ATCCAGAAGGAATCAACGCTCCA 4416 >seq4364 Length=177085 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || || | ||||| | ||||| ||| || Sbjct 157147 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTC 157088 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| || ||| ||||||||||| ||||| || || || Sbjct 157087 GGACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 157028 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || | ||||| | ||||||| | ||||||||| Sbjct 157027 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTACAA 156968 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || ||| | || || Sbjct 156967 CATCCAGAAGGAATCGACCCTCCATCTCGTACT 156935 >seq616 Length=1528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || || | || || ||| ||| Sbjct 365 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTCT 306 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| |||| || | || ||||||||||| ||||| || || Sbjct 305 GATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCCCCAGA 250 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| ||||| || || | || |||| ||||||| || ||| || Sbjct 249 CCAGCAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTA 190 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || ||||| || || ||| | || || |||| | ||||| Sbjct 189 CAACATCCAGAAGGAATCGACCCTCCATCTCGTCCTTCGGCTCCGCGGAGG 139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | ||||| || | ||||| | |||||||| || Sbjct 594 AATGCAGATCTTCGTCAAAACGCTCACCGGCAAGACGATCACCTTGGAAGTGGAAGGCTC 535 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 534 GGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 475 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| ||||| || || | || |||| ||||| | || ||||| Sbjct 474 GCAGCGCCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCGGACTACAA 415 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||| | || || Sbjct 414 CATCCAGAAAGAATCCACCCTCCATCTCGTCCT 382 >seq871 Length=2590 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||| || || || ||||| | ||||| || | ||||| | |||||||| | Sbjct 497 CAATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATCACCCTGGAAGTGGAAGGTT 556 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| |||||| | ||| || ||| ||||||||||| ||||| ||||| | Sbjct 557 CTGACAGCATCGAGAACGTAAAGGCGAAGATCCAGGACAAAGAAGGTATTCCCCCTGATC 616 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || ||||| || || | ||||| | || || | ||| |||| Sbjct 617 AGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCAACGACTACA 676 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||| || | ||| | ||||| Sbjct 677 ACATCCAAAAGGAATCGACTTTGCATCTCGTGCT 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297189566710