Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq616 122 7e-23 seq611 116 3e-21 seq5007 107 2e-18 seq4364 89.7 4e-13 seq3387 82.4 6e-11 >seq616 Length=1528 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | ||||| || ||| |||| | ||||||||| | | Sbjct 593 ATGCAGATCTTCGTCAAAACGCTCACCGGCAAGACGATCACCTTGGAAGTGGAAGGCTCG 534 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || ||||||||||| || || || || || || Sbjct 533 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 474 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | |||||| ||||||| | || || |||||| Sbjct 473 CAGCGCCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCGGACTACAAC 414 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||||||| | ||| | || | ||| | |||||||| Sbjct 413 ATCCAGAAAGAATCCACCCTCCATCTCGTCCTCCGACTCCGCGGAGG 367 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| | ||||||||||| ||| | | Sbjct 1327 ATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATTACTCTTGAAGTTGAAGGCTCT 1268 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||||||||| || ||||| || || || Sbjct 1267 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 1208 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||| | |||||| |||||| | ||||| |||||| Sbjct 1207 CAGCGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 1148 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | ||| | || | || | |||||||| Sbjct 1147 ATTCAGAAGGAGTCAACCCTCCATCTCGTCCTTCGGCTTCGCGGAGG 1101 >seq611 Length=17302 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | ||||| ||||| |||| ||||| || ||| | Sbjct 5559 ATGCAGATCTTCGTCAAAACGCTCACCGGAAAAACCATCACCCTTGAGGTTGAAGGTTCG 5500 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || ||||| ||||| || ||||| || ||||| Sbjct 5499 GATACCATCGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGATCAG 5440 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||||| || ||| ||||||| |||| ||||||||| Sbjct 5439 CAGCGATTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCGGATTACAAC 5380 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || |||||||| Sbjct 5379 ATTCAGAAGGAATCCAC 5363 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281 || || || || ||||| | ||||| || ||| |||||||||| || ||| | | || Sbjct 6177 CAGATCTTCGTCAAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGAC 6118 Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341 || | || | | || ||||| ||||| ||||| || ||||| || || || || Sbjct 6117 ACGATTGAGAACGTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAG 6058 Query 22342 CGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATT 22401 || || || || |||||||| ||| | |||||| ||||| | ||||| |||||||| Sbjct 6057 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACATC 5998 Query 22402 CAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||||||| | || | || | || | |||||||| Sbjct 5997 CAGAAAGAATCCACCCTCCACCTGGTCCTTCGGCTCCGCGGAGG 5954 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || ||||| || || ||||| || || || || ||||| || Sbjct 4534 AAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAACAGCGCCTCATCTTCGCCGGAAAG 4475 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| |||||| | || || |||||||| || || ||||| || Sbjct 4474 CAGCTCGAGGATGGTCGCACCCTGTCGGACTACAACATCCAGAAGGAATCAAC 4422 >seq5007 Length=89527 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || ||| |||| || || || ||| | || Sbjct 22486 ATGCAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTCGAAGGCTCC 22427 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || ||||||||||| || || || || || || Sbjct 22426 GATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCAG 22367 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || || | ||||| ||||| ||||||| |||||| Sbjct 22366 CAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCGACTACAAC 22307 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || ||| | ||| | || | || |||||||||| Sbjct 22306 ATCCAGAAAGAGTCGACCCTCCATCTCGTCCTTCGTCTGCGCGGAGG 22260 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || ||| |||| || || || || | || Sbjct 22258 ATGCAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTTGAGGGCTCC 22199 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || ||||||||||| || || || || || || Sbjct 22198 GATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCAG 22139 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || || | ||||| ||||| ||||||| |||||| Sbjct 22138 CAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCGACTACAAC 22079 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| || ||| | ||| | || | || |||| || || Sbjct 22078 ATTCAGAAAGAGTCGACCCTCCATCTCGTCCTTCGTCTGCGTGGGGG 22032 >seq4364 Length=177085 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || ||||| || | Sbjct 157146 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTCG 157087 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || |||||||| || || ||||| || ||||| Sbjct 157086 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 157027 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | || || ||||| |||||||||||||| Sbjct 157026 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTACAAC 156967 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| ||| | ||| | || | ||| | ||||| || Sbjct 156966 ATCCAGAAGGAATCGACCCTCCATCTCGTACTCCGACTTCGCGGTGG 156920 >seq3387 Length=880 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | || ||||| ||| |||| || || ||||| | Sbjct 562 ATGCAGATTTTCGTCAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTGGAGGGATCG 621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| |||||||| ||||| Sbjct 622 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCTGATCAG 681 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| ||||| || ||||| || Sbjct 682 CAACGCCTTATCTTCGCCGGTAA 704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698156552210