Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq616 111 1e-19 seq4364 109 5e-19 seq5007 102 7e-17 seq611 98.7 8e-16 seq871 91.5 1e-13 seq4684 87.8 2e-12 >seq616 Length=1528 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| || ||| ||| ||| || || || || || Sbjct 169 GTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGCTGCTTTCCG 228 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | ||||| ||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 229 GCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 288 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||| || | | ||||| |||| ||| | ||| ||||| || || || Sbjct 289 ACATTTTCGATGGTATCAGAGCCCTCGACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTC 348 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 349 TTCACGAAGATCTGCATGCCT 369 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| || ||| || ||| || || || || || Sbjct 1131 GTTGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCG 1190 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | ||||| ||||| |||||||| ||||| ||||| ||||| ||| Sbjct 1191 GCGAAGATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTG 1250 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | ||| || || | || | ||| || ||||| || || Sbjct 1251 ACATTCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATCGTCTTTCCGGTGAGCGTC 1310 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 1311 TTGACGAAGATCTGCATGCCT 1331 >seq4364 Length=177085 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| | || | ||| | || ||||| || || |||||||||||| Sbjct 156917 ATTCCACCGCGAAGTCGGAGTACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCG 156976 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| ||||| || || || || ||| |||| | |||||| || || ||| Sbjct 156977 GAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGA 157036 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||| || | | |||| |||||| | ||| Sbjct 157037 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCCGAACCCTCG 157096 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||| ||||| || || || || || || |||||||| Sbjct 157097 ACTTCCAGGGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 157146 >seq5007 Length=89527 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||| | || || || || ||||| || || Sbjct 22290 GTCGACTCTTTCTGGATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCG 22349 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| ||||| |||||||| ||||| ||||| || Sbjct 22350 GCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTC 22409 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| | |||||| || | || | ||| || || || || ||| Sbjct 22410 ACGTTCTCGATGGTATCGGAGCCTTCGACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTT 22469 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| |||||||||||| Sbjct 22470 TTCACAAAGATCTGCATGGCT 22490 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||| | || ||||| || | | || | ||| | || || ||||| ||||||||||| Sbjct 22026 CAATTTCCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAG 22085 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 ||| | || || || || ||||| || || ||| ||||||| ||||| ||||| Sbjct 22086 TCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCT 22145 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 ||||| |||||||| ||||| ||||| || | | || | ||| |||| | Sbjct 22146 GGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCC 22205 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || | || | ||| || || || || ||||| ||||| ||||||||| || Sbjct 22206 TCAACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGCCT 22262 >seq611 Length=17302 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| ||||| || || |||||||| || || || ||| ||| || || || || || Sbjct 4421 CGTTGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCGAGCTGCTTTCC 4480 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| ||||||||||| || ||||| ||||| ||||| ||||| || Sbjct 4481 GGCGAAGATGAGGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTT 4540 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||| | |||||| |||| ||| | || ||||| || || || Sbjct 4541 CACGTTCTCGATAGTGTCCGATCCTTCGACTTCCAGGGTAATGGTCTTGCCAGTGAGCGT 4600 Query 114365 TTTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 4601 CTTCACGAAAATCTGCATG 4619 >seq871 Length=2590 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| |||||||| ||| | | || || ||||| || || || || Sbjct 695 GTCGATTCCTTTTGGATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCG 636 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | |||||| || || || ||||| ||||||||||| ||||| ||| Sbjct 635 GCGAAGATCAAACGCTGCTGATCAGGGGGAATACCTTCTTTGTCCTGGATCTTCGCCTTT 576 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | | |||| | ||| || |||| ||| | ||| || ||||| || || Sbjct 575 ACGTTCTCGATGCTGTCAGAACCTTCCACTTCCAGGGTGATCGTCTTCCCGGTGAGGGTC 516 Query 114366 TTTACAAAAATCTGCATGGC 114385 || || || |||||||| || Sbjct 515 TTCACGAAGATCTGCATTGC 496 >seq4684 Length=226209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||| ||| | || || ||||||||||| || ||||| ||||| ||||| ||||| Sbjct 8833 TACCGGCGAAAATCAGTCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGG 8892 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || | | ||||| |||||||| || || || || | ||| | || ||||| |||| Sbjct 8893 CCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCAGTCA 8952 Query 114361 GAGTTTTTACAAAAATCTGCATG 114383 ||| || || |||||||||||| Sbjct 8953 AAGTCTTGACGAAAATCTGCATG 8975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420104527656408