Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq5071 141 2e-28
>seq5071
Length=368534
Score = 141 bits (156), Expect = 2e-28
Identities = 419/633 (66%), Gaps = 11/633 (2%)
Strand=Plus/Minus
Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456
||||| |||||||| || | || |||| |||||||| || || || ||||| ||||
Sbjct 135557 ACGAACAGTTTTTCATCTCGCATGTATTGGCATTCTTCGCAGCATCAGATGGCATCGTCA 135498
Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516
|||| || || | | |||| ||||||| || ||||| | | ||||
Sbjct 135497 ATGAAAATCTCATCGATCGTTTCACTCAAGAGGTCAAGATGCCGGAGGCCCTTTCGTTCT 135438
Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576
|| ||||||| || ||| | ||| | |||||||| ||||| | || || | |
Sbjct 135437 ACAGCTTCCAAATCGCCGTCGAGGGGATTCACTCTGAAATGTACTCGAAGATGATTGAGG 135378
Query 42577 CGTACATCCTGGATCC-CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCC 42635
| ||| | ||||| ||| ||| ||| ||| ||||| ||||| | | || |||
Sbjct 135377 CCTACGTGACCGATCCTCGT-GAGAAGAACAAGCTCTTCAACGCCATCCA-AGAATTCCC 135320
Query 42636 -TGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGT 42693
|||||||| ||||| || ||||||||||| ||||||| | | | || ||| |||
Sbjct 135319 ATGCATCAAAAAGAAAGCTGACTGGGCGCTTCGTTGGATCG-GTGACAAGAACGCGTCGT 135261
Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753
|||| | || | ||||| | || || |||||||| |||||||| || | ||||
Sbjct 135260 TCGGAACACGTGTGATCGCCTTCGCTGCTGTGGAGGGCATTTTCTTCTCAGGATCGTTCG 135201
Query 42754 CCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812
| |||| |||||| | || || ||| || ||||| || |||||| | ||||||
Sbjct 135200 CTGCCATATTCTGGTTGAAAAAGCGTGGTCTC-ATGCCTGGCCTCACCCACAGCAACGAA 135142
Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872
||||| | |||| || || || ||| | ||||| || |||||| ||| | || |
Sbjct 135141 CTCATTTCCCGGGATGAAGGCCTACATCGCGACTTCGCATGCCTCATGT--ACAAGTACC 135084
Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932
| | | || | | ||| || || ||| ||| |||||||| |||
Sbjct 135083 TTGATGAGAAACCGAACCAAGAAG-AAGTAAACATCATTATCCGAGAGGCCGTAACCATC 135025
Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992
|||||||||| | || || || || || ||| | || | || |||||| ||
Sbjct 135024 GAGAAGGAGTATTTGACCCAATCCCTTCCTGTGGACATGATTGGGATGAACTGTCGTCTT 134965
Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCAT 43025
|||| | |||||| | |||||||||||||||
Sbjct 134964 ATGTCTACATACATCGAATACGTCGCCGACCAT 134932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944270334063840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |