Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq1811 237 5e-58 >seq1811 Length=36858 Score = 237 bits (262), Expect = 5e-58 Identities = 694/1054 (66%), Gaps = 35/1054 (3%) Strand=Plus/Plus Query 2568 CGGTCCTGCAAAACTGCGTCACGCTGCTGGCGGAAAGCATCGCGCAGTTGCCGGTCGAAC 2627 || ||||||| ||||||||||| ||||| || ||||||||||| |||||||| | || | Sbjct 16061 CGATCCTGCAGAACTGCGTCACTCTGCTCGCTGAAAGCATCGCTCAGTTGCCCCTGGAGC 16120 Query 2628 TGTATGAGCGCTCCGGCGACG---ACCGAAAGCCGGCGACCGATCATCCGCTGTATTCGA 2684 |||| || | || | | || || | || | | | |||||||| || ||| Sbjct 16121 TGTACATCCGGAAAGACGGTGGTCAGCGGGAGTCAGCTATCAACCATCCGCTTTA--CGA 16178 Query 2685 T--CCTGAAGTACGAGCCGAACCCGTGGCAAACGCCATTTGAGTATCAGGAGCAGTCGCA 2742 | |||| |||| |||| ||| || ||||| || | |||||| | ||| ||||| Sbjct 16179 TGTCCTGCGGTACCAGCCCAACGGGTTCCAAACCCCGTATGAGTACCGGGAATGTTCGCA 16238 Query 2743 -GGTGGCCGTGGGCCTTCGCGGCAATAGCTACAGCTTCATCGATCGCGATCAGGACGG-- 2799 || || ||||| | | ||||||||| |||||||||||| ||| | ||||| Sbjct 16239 AGGCTTCCTTGGGC-TCAGGGGCAATAGCATCAGCTTCATCGACCGCCGGGAAGACGGAA 16297 Query 2800 -CGTGATTCAGGGA-CTGTATCC----GCTCGACAACGAAGCCGTGACGGTCATGAAGGG 2853 ||| | | | | ||| | || || || || | | ||| |||||||||| Sbjct 16298 ACGT--TGCCGCGCTCTGGAACCTGCAGCCTGAAAAGGTTG---TGA---TCATGAAGGG 16349 Query 2854 ACCGGACCTGAAGCCGATGTATCGCGTGGCCGGCGCCGATCCGCTGCCGCAGCGGCTCGT 2913 ||| || || || ||| | ||| | || || ||||| |||| | | Sbjct 16350 TAGCGACATGCTTCCTTACTACCGCATATGCGGTGGTGAGGCGTTGCCGATGCGGATGAT 16409 Query 2914 TCATCATGTTCGATGGATGTCGATCAATGGGTATACGGGCCTGTCTCCGGTCTTGCTGCA 2973 |||||| ||||| ||| | | |||| |||| ||| ||||| || | |||| Sbjct 16410 TCATCACGTTCGTTGGTTCAGTACCAATCAGTATGTGGGGCTGTCGCCAATTGAAGTGCA 16469 Query 2974 TGCGAATGCGATCGGGCACGCACAGGCGATCCAGCAGTACGCAGGCAAATCGTTCATGAA 3033 |||| | | | |||| || ||||| | ||||||| | ||||| || || Sbjct 16470 TGCGGAGTCCCTAGGGCTGGCCCAGGCCGTTAGGCAGTACACCGGCAAGAGCTTTGCCAA 16529 Query 3034 CGG---CACGGCGCTGTCGGGGGTCATTGAACGGCCGACAGACGCGCCTGCCTTGAAGGA 3090 || ||||| ||||||| || || || || || || || || || | ||||| Sbjct 16530 TGGTGTCACGG---TGTCGGGCGTGATCGAGCGCCCCCGTGAAGCCCCGGCGATCAAGGA 16586 Query 3091 TCAGGCAAGCGTTGATCGCATCACCGACGGCTGGAACGCGAAGTTCGGCGGGTCCGGTAA 3150 ||||| ||| | || ||| ||| ||| |||||| ||||| | || Sbjct 16587 TCAGGGAAGTATCGACAAGATCGTCGATCAGTGGGGGCAGAAGTTTGGCGGCATGGACAA 16646 Query 3151 CGCGAAGAAGGTCGCGCTGTTGCAGGAGGGCATGAAGTTCAAGCCGCTGTCGATGACCAA 3210 ||| |||||||| |||||| | || ||||| |||| ||||| || | || |||| ||| Sbjct 16647 CGCCAAGAAGGTGGCGCTGCTTCAAGAGGGGATGACTTTCAAACCCGTCTCCATGAACAA 16706 Query 3211 CGTCGACGCGGCGCTGATCG--ATGCATTGCGACTGTCGGCGCTCGATATCGCGCGGATC 3268 ||| || |||| | | | | || | | | || |||| | |||||| || ||||| Sbjct 16707 CGTTGATGCGGAGGTACTGGGGATCC-TCAAGGCTACCGGCAC-CGATATTGCCAGGATC 16764 Query 3269 TACAAAATCCCGGCTCACATGGTCAACGAGCTGGAGCGGGCGACGTTCAGCAACATCGAG 3328 ||||| || || | |||||| ||||| |||||| | | | | || || | | || Sbjct 16765 TACAAGATTCCATTGCCCATGGTGAACGACCTGGAGAAGTCCAATTACAACACCCTGGAA 16824 Query 3329 CATCAGTCGCTCCAGTTCGTGATCTACACGCTGCTGCCGTGGGTGAAACGGCATGAACAG 3388 || | | ||||||| ||| | | | ||||||| |||||||| || || |||||| Sbjct 16825 CAGCTCATGATCCAGTTTGTGGTGTTCGGCTTGCTGCCCTGGGTGAAGCGTCACGAACAG 16884 Query 3389 GCGAAGACGCGCGACCTGCTCTTGCCGTCGGAGCGCAAGCAGTACTTCATTGAATACAAC 3448 || | || |||||| | || ||| ||| || | |||||||||| || | |||| Sbjct 16885 GCAATGATGCGCGATTTTCTGCTGCTCAAGGATCGGCGGGAGTACTTCATCGAGTTCAAC 16944 Query 3449 CTCGCGGGGCTCTTGCGCGGCGATCAGTCGTCGCGCTACGCCGCGTATGCGGTCGGGCGC 3508 ||| | || || |||||||||| ||| | ||||||| || ||||| | || || Sbjct 16945 CTCTCCGGCCTGCTGCGCGGCGACCAGAAGAGCCGCTACGAGGCATATGCCATTGGCCGG 17004 Query 3509 CAGTGGGGGTGGCTGTCGATCAACGACATTCGGCGGCTGGAGAACATGCCGCCGGTCAAG 3568 || ||||| ||| || | || ||||| || || ||||| ||||||||||| || Sbjct 17005 CAATGGGGCTGGTTGAGTGTAAATGACATCCGCCGCCTGGAAAACATGCCGCCTGTACCT 17064 Query 3569 GGCGGCGACATCTACCTGAGTCCGATGAACATGG 3602 || ||||| ||||| ||| ||| ||||||||| Sbjct 17065 GGTGGCGATATCTATCTGCAACCGTTGAACATGG 17098 Score = 199 bits (220), Expect = 1e-46 Identities = 632/951 (66%), Gaps = 44/951 (5%) Strand=Plus/Plus Query 5136 GAAGTCGCAATGTCGCTTAATACCCTTTCGCCGGGCGCTGGCGGCGTCCTGGTGCCTGAG 5195 || || || ||| |||| || || | |||| || ||||| || || ||||||||| || Sbjct 18580 GATGTAGCCATGGCGCTGAACACTGTAACGCCAGGTGCTGGTGGGGTTCTGGTGCCTCAG 18639 Query 5196 AACCTGTCGAGCGAGGTCATCGAACTGCTGCGTCCGAAGTCCGTCGTTCGCAAGCTCGGC 5255 ||| | ||| ||| |||| ||| |||||| || | ||| ||||| ||||| | || Sbjct 18640 AACTTTGCGACAGAGATCATTGAAGCGCTGCGCCCCATGTCGGTCGTGCGCAAAATGGGT 18699 Query 5256 GCGCGCACGCTGCCGCTCTCGAACGGCAACATCACTATCCCGCGCCTGAAGGGCGGTGCG 5315 || || | |||||||| ||||||||| | || ||||| | | || || Sbjct 18700 GCCCGAAGCCTGCCGCTAAACAACGGCAACCTGACGCAGCCGCGAATTACCGGTAACACG 18759 Query 5316 ATCGTCGGCTACATCGGCGCTGACACCGATATCCCGACGACACA---ACAGCAGTTCGAC 5372 ||||| |||||||| ||||| |||||||||||| | ||| | || |||| Sbjct 18760 GTCGTCACTTACATCGGTGCTGATACCGATATCCCG--GTCACTGGTATGACA-TTCGCT 18816 Query 5373 GATTTGAAACTGACGGCGAAGAAGATGGCTGCGCTGGTACCAATCGCCAACGATCTCAT- 5431 ||| || ||| | |||||||| ||| || | || || ||| |||| || || || Sbjct 18817 GATACCAAGCTGTCTGCGAAGAAAGCGGCGGCAATTGTTCCGATCTCCAATGACCTGATT 18876 Query 5432 -CAAGTACGCCGGCGTGAATCC--GAACGTCGATCAGATCGTGGTTGGCGACCTCACCGC 5488 ||| |||| ||||| | || |||| ||| | ||||| || | || || | Sbjct 18877 GCAA--ACGCTGGCGTCAGCCCACGAAC--CGACGACATCGTCGTCAGTGATCTGGTTGT 18932 Query 5489 GGCGATCGGTGCACGCG-AAGACAAGGCGTTTATTCGCGACGACGGCA-CGGCAAACACG 5546 | |||| || || || ||||| | ||||| || ||| || | ||||| | | Sbjct 18933 GTCGATGGG-GCTTTCGGAAGACCTGCACTTTATCCGTTCCGATGGTAGCGGCACGCT-G 18990 Query 5547 CCGAAGGGCCTCCGCTTCTGGGCACTCCCCGGT-AACGTCATTACGGCAAGCGACG--GC 5603 || ||||| | || | |||||| | | || | ||||| | | || ||| | || Sbjct 18991 CCCAAGGGGATGCGTTACTGGGCCC-CGGCGTTCAACGTGTTGCCCGCGCCCGATGCTGC 19049 Query 5604 -----TCGACGTTGCAGAAGATCGAAACGGACCTCGGCAAAGCCATTCT-CGCGCTCGAA 5657 || || || |||||||||| | | |||| || || ||| |||||| Sbjct 19050 AAACATC-ACCCTGGAGAAGATCGATCTGTTCTGCGGCGGCATGATGCTTCGC-CTCGAA 19107 Query 5658 AATGCCGACGCCAATCTGACGCAGCC-TGGCTGGATCATGGCCCCGCGTACGTTCCGCTT 5716 | ||| ||| | ||| | ||| ||||||| | ||| |||||| || || | Sbjct 19108 ACGGCCAACGTGATGATGAAG-AGCTGTGGCTGGTTGATGCATCCGCGTGTCTTTCGTTG 19166 Query 5717 CCTCGAAGGTC--TGCGTGACGGGAACGGCAACAAGGTCTATCCGGAACTCGCCAACGGC 5774 || | ||| |||| || || || |||||||||| ||||||||| | | | ||| Sbjct 19167 GCTGCA--GTCGTTGCGCGATGGCAATGGCAACAAGGCGTATCCGGAAATTGAACAGGGC 19224 Query 5775 ATGCTGAAGGGCTACCCGGTAGGCAAAACCACGCAAGTGCCGATCAATCTCGGTGAAGCC 5834 || | |||||||| ||||| ||| | || || | ||| | || ||||| | | Sbjct 19225 TTGTTCAAGGGCTATCCGGTGGGCCTGAGCAATCAGATCCCGGTAAACCTCGGGGCTGGT 19284 Query 5835 GGCAAAGAGTCGGAGATCTATTTCACCGACTTCGGCGACGTCTTCATCGGCGAGGAAGAA 5894 ||||| ||| | || | || ||| | |||||| |||| | | |||||||| |||| Sbjct 19285 GGCAACGAGACTGAATTTTACTTCGTCAACTTCGCCGACATGATGATCGGCGA---AGAA 19341 Query 5895 ACG---CTGGAGATCGACTACAGCAAGGAAGCCACCTACAAGGACGCCGATGGTCACATG 5951 | | ||| ||| | ||| | || || ||||||||||||| || || ||||| Sbjct 19342 ATGGACCTGACTATCTCGTTCAGTAGCGAGGCTTCCTACAAGGACGCTGACGGCAACATG 19401 Query 5952 GTCAGTGCGTTTCAGCGCGACCAGACGCTGATCCGGGTGATCGCAAAGAACGACTTCGGC 6011 || |||||||| ||||| |||||||| ||| || ||| |||||||| ||||||| ||| Sbjct 19402 GTGAGTGCGTTCCAGCGTGACCAGACCCTGGTCAAGGTAATCGCAAAACACGACTTTGGC 19461 Query 6012 CCGCGTCACGTCGAGTCGATCG-CGGTGCTGTCCGGCGTGGCCTGGGGCGC 6061 ||||||||||| || | |||| || ||| | |||||| |||||||| Sbjct 19462 CCGCGTCACGTTGAATGCATCGTCGTTGCAAT-CGGCGTCAAGTGGGGCGC 19511 Score = 132 bits (146), Expect = 1e-26 Identities = 308/457 (67%), Gaps = 8/457 (2%) Strand=Plus/Plus Query 3975 GTGCGAGCCGATGACGAGCTACGAGGGGCTGCGTGCCGCGGTGAATCAGGCAGTGGCCGA 4034 ||||||| ||||||| || || || | ||||| || || | || || ||||| Sbjct 17468 GTGCGAGACGATGACCAGTTATGAAAGCCTGCGGGCGCAACTGCGCAACGCGGTCGCCGA 17527 Query 4035 CCCCGCGGTCGAACACATCGTGCTCGATATCGACAGCAATGGCGGCAGCGCCACCGGCGC 4094 || |||||| | |||||||||||||||||| ||| || || || || || Sbjct 17528 TCCGATGGTCGAGCGCATCGTGCTCGATATCGATAGCCCCGGTGGGTCTGCGGTGGGGGC 17587 Query 4095 GTTCGAACTGGCCGACGATATCCGGGCCGCGTCGCTGGTCAAGCCAATTACCGCGATCGT 4154 ||| || |||| | || ||||| ||| | | | | || || || |||| ||||| Sbjct 17588 GTTTGAGTTGGCTGCTGACATCCGAGCCATGGCCCAGCAGAAACCGATCACCGGCATCGT 17647 Query 4155 GAACTTCTCGGCGTTCTCGGGCGGCTATCTGATTGCCGCTGCG-GCGTCGCAGGTCATCG 4213 ||||| ||| | | |||||||||||| | | ||||| || | || | ||| Sbjct 17648 CAACTTTATGGCCTACAGCGGCGGCTATCTGCTCGGGGCTGCCTGCAGTG-AGCTGGTCG 17706 Query 4214 TGAGCCGCACGTCCGGCGTCGGGTCGATTGGCGTCATCGCGAACCATCTGGACGTGTCCA 4273 |||| | || ||| ||||| || ||||| || ||||| | ||| ||||| |||| Sbjct 17707 TGAGTCAGACCAGCGGAGTCGGATCTATTGGTGTGATCGCCAGCCACATGGACCGTTCCA 17766 Query 4274 AACGTGACGAGCAGCAAGGGA-TCAAGGTGACGTCGGTGTTTGCCGGGGACCACAAGAAC 4332 | || || ||| ||| | |||||||| |||| ||||| || | ||| || || Sbjct 17767 AGATGGAAGAAG-GCATGGGCGTGAAGGTGACCACGGTTTTTGCTGGCGCCCATAAAAAT 17825 Query 4333 GATCTCACCCCGCACGAGCCGCTGAGCGATCAGTCGCTGGCGTTCCTCACCAGCATG--G 4390 ||||| | ||| || |||||| ||||||||||||| ||| || ||| | | ||| | Sbjct 17826 GATCTGAGCCCTCATGAGCCGTTGAGCGATCAGTCTCTGAAGTACCTGA--ATGATGTCG 17883 Query 4391 TGCAAAACAGCTACAAGCAGTTCGTCGATGCAATCGC 4427 |||| | ||||| ||| ||||| | || ||||| Sbjct 17884 TGCAGGAAAGCTATCAGCTCTTCGTTAACGCCATCGC 17920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155624417787888