Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 111 2e-19
seq5071 82.4 9e-11
>seq5716
Length=132174
Score = 111 bits (122), Expect = 2e-19
Identities = 446/701 (64%), Gaps = 21/701 (3%)
Strand=Plus/Minus
Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001
|| || |||| |||||| ||||| | | | |||||||| || | |||||| ||||| ||
Sbjct 122653 TAAATGTTGGACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGAT 122594
Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061
|| || ||||| || || | || || ||||| || | || | | | || ||
Sbjct 122593 GCGGTCGGCATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTCT 122534
Query 114062 TTGAGGGCGTCCCAGTC----------GTAGTT--GA--GCTTTGTCTCCCCCTG----C 114103
||||| | ||||||| |||| || | |||| | | ||| |
Sbjct 122533 TTGAGAGATGCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGC 122474
Query 114104 CACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGG 114163
||||| ||| |||| || || |||||| |||| || |||||| | || ||||| ||
Sbjct 122473 CACATTTCATACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGA 122414
Query 114164 CCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAA 114223
|| | ||| || | |||| | ||| || || ||||||| || ||||| |||||
Sbjct 122413 CCATATTTCTCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAG 122354
Query 114224 ATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAAT 114283
|| || |||| | |||| | |||| | | || | || ||
Sbjct 122353 ATTCGCTTGTTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAG 122294
Query 114284 ACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGA 114343
|||| || | ||| || || |||| || ||||||||||| | | | ||||| || |
Sbjct 122293 GCATCAGCCAAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCA 122234
Query 114344 GCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 114403
|| | | ||||| | || | || || | | || | ||| |||| |||
Sbjct 122233 GCTTCCGGTATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACC 122174
Query 114404 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 114463
|| || || || ||||||||||| || || || | | || || || ||| | |
Sbjct 122173 TTGGTAATCTCGTGAAGCTTTTCATAGTCGAA---GGTCTTGTCATCCTTCACAAATCTG 122117
Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523
| |||| || |||||||| || |||| | ||||| | ||||| |
Sbjct 122116 TTCAAAGCGACGGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACT 122057
Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583
||||| || |||| |||||| | ||| || || ||||| ||||| || || ||||||
Sbjct 122056 ATTTCGGTGCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGA 121997
Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624
|| || ||||| |||||||||||||| || || || || ||
Sbjct 121996 TTGCATGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTC 121956
>seq5071
Length=368534
Score = 82.4 bits (90), Expect = 9e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118
|| || || || || ||||| |||||||| || | | || || |||||||||||
Sbjct 135116 TGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGTGGGTGAGGCCAGGCATGAGACCA 135175
Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178
||||| ||||||||||| || ||| || || || |||||||| || |||||||||
Sbjct 135176 CGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTGAGAAGAAAATGCCCTCCACAGCA 135235
Query 126179 GCGAACGC 126186
||||| ||
Sbjct 135236 GCGAAGGC 135243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597310037988720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |