Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5007 114 1e-20 seq616 91.5 1e-13 seq611 82.4 8e-11 >seq5007 Length=89527 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | | ||||| || ||||||||||||||| Sbjct 22032 CCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCGGAG 22091 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||||||| || |||| |||| || ||||| ||||| ||||| Sbjct 22092 AGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGG 22151 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||| |||| ||| ||| Sbjct 22152 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCAACC 22211 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| ||| | ||| || || || || ||||| ||||| ||||||||| || Sbjct 22212 TCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGCCT 22262 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | ||| | | | ||||| || || |||||||||||| Sbjct 22259 GCCTCCGCGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGA 22318 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||||||| || |||| |||| || ||||| ||||| ||||| Sbjct 22319 GAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 22378 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||| |||| || || Sbjct 22379 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCTTCGAC 22438 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTAT 138621 ||||| ||| | ||| || || || || ||||| ||||| |||||||||||| || Sbjct 22439 CTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGGCTGAT 22493 >seq616 Length=1528 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| || ||| || |||||||| || || |||| Sbjct 172 GATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGCTGCTTTCCGGCG 231 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||| ||||| || || || ||||||||||| ||| || ||| | Sbjct 232 AAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACA 291 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||| || | ||| ||||| | || | ||| || ||||| || || || Sbjct 292 TTTTCGATGGTATCAGAGCCCTCGACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTC 351 Query 138601 ACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 352 ACGAAGATCTGCATGCCT 369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||| | | |||||||||| ||||||||||||||| || ||| || |||||||| || Sbjct 1124 ATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTG 1183 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 || |||| |||| | ||||| ||||| ||||| || ||||| ||||| ||| || Sbjct 1184 CTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 1243 Query 138531 TTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 ||| | | || | |||||| | || || || | || | ||| || || || Sbjct 1244 GGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATCGTCTTTCCGGT 1303 Query 138591 CAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || || || || ||||||||| || Sbjct 1304 GAGCGTCTTGACGAAGATCTGCATGCCT 1331 >seq611 Length=17302 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || || || || ||||| |||| Sbjct 5138 GACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGTTTTCCGGCG 5197 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || ||||| ||||| |||||| || | Sbjct 5198 AAGATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTGGCCTTCACG 5257 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| |||| || ||||| | || | ||||| || || || || || Sbjct 5258 TTCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGTGAGCGTCTTC 5317 Query 138601 ACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 5318 ACGAAGATCTGCATGCCT 5335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226210064480