Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq616 116 3e-21
seq4364 113 4e-20
seq871 102 7e-17
seq611 89.7 5e-13
seq3195 87.8 2e-12
seq3368 84.2 2e-11
>seq616
Length=1528
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| |||||||| |||| | || || || || || |||||||| |||||||| || |||
Sbjct 870 ATGCCTCCGCGAAGCCGAAGGACGAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCG 929
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| | ||| |||| || ||||| ||| | |||||||| |||||||| ||
Sbjct 930 GAGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGG 989
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| ||||||||||| || || || || | || | || | |||||||| ||
Sbjct 990 GGAATTCCTTCTTTATCCTGGATCTTGGCCTTCA-CGTTCTCAATCGTGTCGGAGCCTTC 1048
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | || ||||| || | || || ||||| || |||||
Sbjct 1049 CACTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1099
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||||||||||| | || ||||| || || |||||||| ||||| || || |||
Sbjct 136 ATGCCTCCGCGGAGCCGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCG 195
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || | || ||||| ||| | || | || |||||||| ||
Sbjct 196 GACAAAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGG 255
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| |||||||| || || || || ||||| ||| | ||| || || ||||
Sbjct 256 GGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCG 315
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || |||| ||| ||||| || || || || || || || |||||
Sbjct 316 ACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365
>seq4364
Length=177085
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| ||||| || | | || ||||| || || |||||||| ||||| || ||||||
Sbjct 156917 ATTCCACCGCGAAGTCGGAGTACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCG 156976
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || | || || | || ||||| ||| | ||||| || ||||| || ||
Sbjct 156977 GAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGA 157036
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||||||||| ||||| || || || | || | || | |||||| ||| |||
Sbjct 157037 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCCGAACCCTC 157095
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| || || | ||| ||||| || || || || || || || |||||
Sbjct 157096 GACTTCCAGGGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 157146
>seq871
Length=2590
Score = 102 bits (112), Expect = 7e-17
Identities = 164/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
||| || ||||| | | ||| ||||||| || |||||||||||||| || || ||| |
Sbjct 726 TCCACCACGGAGACGGAGCACGAGATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTT 667
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
|| |||| || || | || ||||| ||| | ||||| || ||||| || || ||
Sbjct 666 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGG 607
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291
||| |||||||| || || || || || | || | || | | |||| ||| || |
Sbjct 606 AATACCTTCTTTGTCCTGGATCTTCGCCTTTA-CGTTCTCGATGCTGTCAGAACCTTCCA 548
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344
|||| || || | ||| || ||||| || || || || || || ||||| |||
Sbjct 547 CTTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATTGCG 495
>seq611
Length=17302
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||||||||||| | || || || || || ||||| || ||||| || || |||
Sbjct 5951 ATGCCTCCGCGGAGCCGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 6010
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || | || || || ||| | |||| || |||||||| ||
Sbjct 6011 GACAAAGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGG 6070
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| ||||| |||||||| ||||| || | || | || | ||||| || ||
Sbjct 6071 GGAATTCCTTCCTTATCTTGGATTTTGGCCTTCA-CGTTCTCAATCGTGTCAGAGCCTTC 6129
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337
||| || ||||| | ||| || ||||| || ||||| || || || ||
Sbjct 6130 GACCTCAAGAGTGATCGTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
||| ||||| || | | || || || |||||||||||||| ||||| || || ||
Sbjct 4391 TCCACCGCGAAGACGAAGGACGAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCGA 4450
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
| ||| | ||| || | || ||||| ||| | || | || || ||||| || ||
Sbjct 4451 CAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGGG 4510
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291
||| ||||| || ||||| || || || | || | || | ||||| || ||||
Sbjct 4511 AATTCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGTTCTCGATAGTGTCCGATCCTTCGA 4569
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| || |||| || ||||| || || || || || ||||| |||||
Sbjct 4570 CTTCCAGGGTAATGGTCTTGCCAGTGAGCGTCTTCACGAAAATCTGCAT 4618
>seq3195
Length=29224
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | |||| || |||||||| || ||||||||||| || || || || ||
Sbjct 25026 TTACCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 25085
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||||| || | ||||| |||| |||||| ||||| |||| || || || |||
Sbjct 25086 GCTTTGACATTCTCGATAGTGTCCGAAGCCTCGACCTCGAGGGTAATTGTCTTACCCGTT 25145
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || ||||| |||||
Sbjct 25146 AGGGTTTTGACGAAAATCTGCAT 25168
>seq3368
Length=489
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| || ||||| || || ||||||||||| ||||| || || || |||| |
Sbjct 294 ATCAAGCGCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTT 235
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | |||||| || ||||||||| || || | || |||||||| || || || |||
Sbjct 234 TCGATGGTGTCAGAGCCCTCGACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACA 175
Query 45330 AAAATTTGCATCGC 45343
|| |||||||| ||
Sbjct 174 AAGATTTGCATTGC 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451970237666640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |