Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq616 116 3e-21 seq4364 113 4e-20 seq871 102 7e-17 seq611 89.7 5e-13 seq3195 87.8 2e-12 seq3368 84.2 2e-11 >seq616 Length=1528 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| |||| | || || || || || |||||||| |||||||| || ||| Sbjct 870 ATGCCTCCGCGAAGCCGAAGGACGAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCG 929 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| |||| || ||||| ||| | |||||||| |||||||| || Sbjct 930 GAGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGG 989 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||||||||| || || || || | || | || | |||||||| || Sbjct 990 GGAATTCCTTCTTTATCCTGGATCTTGGCCTTCA-CGTTCTCAATCGTGTCGGAGCCTTC 1048 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || ||||| || | || || ||||| || ||||| Sbjct 1049 CACTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1099 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||||| | || ||||| || || |||||||| ||||| || || ||| Sbjct 136 ATGCCTCCGCGGAGCCGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCG 195 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||| ||| | || | || |||||||| || Sbjct 196 GACAAAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGG 255 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| || || || || ||||| ||| | ||| || || |||| Sbjct 256 GGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCG 315 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||| ||||| || || || || || || || ||||| Sbjct 316 ACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365 >seq4364 Length=177085 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | || ||||| || || |||||||| ||||| || |||||| Sbjct 156917 ATTCCACCGCGAAGTCGGAGTACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCG 156976 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || || | || ||||| ||| | ||||| || ||||| || || Sbjct 156977 GAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGA 157036 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||||||||| ||||| || || || | || | || | |||||| ||| ||| Sbjct 157037 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCCGAACCCTC 157095 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || | ||| ||||| || || || || || || || ||||| Sbjct 157096 GACTTCCAGGGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 157146 >seq871 Length=2590 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | | ||| ||||||| || |||||||||||||| || || ||| | Sbjct 726 TCCACCACGGAGACGGAGCACGAGATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTT 667 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || |||| || || | || ||||| ||| | ||||| || ||||| || || || Sbjct 666 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGG 607 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||| |||||||| || || || || || | || | || | | |||| ||| || | Sbjct 606 AATACCTTCTTTGTCCTGGATCTTCGCCTTTA-CGTTCTCGATGCTGTCAGAACCTTCCA 548 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 |||| || || | ||| || ||||| || || || || || || ||||| ||| Sbjct 547 CTTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATTGCG 495 >seq611 Length=17302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||||| | || || || || || ||||| || ||||| || || ||| Sbjct 5951 ATGCCTCCGCGGAGCCGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 6010 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || || ||| | |||| || |||||||| || Sbjct 6011 GACAAAGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGG 6070 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| |||||||| ||||| || | || | || | ||||| || || Sbjct 6071 GGAATTCCTTCCTTATCTTGGATTTTGGCCTTCA-CGTTCTCAATCGTGTCAGAGCCTTC 6129 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337 ||| || ||||| | ||| || ||||| || ||||| || || || || Sbjct 6130 GACCTCAAGAGTGATCGTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| ||||| || | | || || || |||||||||||||| ||||| || || || Sbjct 4391 TCCACCGCGAAGACGAAGGACGAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCGA 4450 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| || | || ||||| ||| | || | || || ||||| || || Sbjct 4451 CAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGGG 4510 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||| ||||| || ||||| || || || | || | || | ||||| || |||| Sbjct 4511 AATTCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGTTCTCGATAGTGTCCGATCCTTCGA 4569 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || |||| || ||||| || || || || || ||||| ||||| Sbjct 4570 CTTCCAGGGTAATGGTCTTGCCAGTGAGCGTCTTCACGAAAATCTGCAT 4618 >seq3195 Length=29224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| || |||||||| || ||||||||||| || || || || || Sbjct 25026 TTACCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 25085 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | ||||| |||| |||||| ||||| |||| || || || ||| Sbjct 25086 GCTTTGACATTCTCGATAGTGTCCGAAGCCTCGACCTCGAGGGTAATTGTCTTACCCGTT 25145 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||| ||||| Sbjct 25146 AGGGTTTTGACGAAAATCTGCAT 25168 >seq3368 Length=489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| || ||||| || || ||||||||||| ||||| || || || |||| | Sbjct 294 ATCAAGCGCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTT 235 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||| || ||||||||| || || | || |||||||| || || || ||| Sbjct 234 TCGATGGTGTCAGAGCCCTCGACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACA 175 Query 45330 AAAATTTGCATCGC 45343 || |||||||| || Sbjct 174 AAGATTTGCATTGC 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970237666640