Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4388 163 1e-34 seq616 109 2e-18 seq5658 102 3e-16 seq4622 98.7 4e-15 seq611 96.9 1e-14 >seq4388 Length=30719 Score = 163 bits (180), Expect = 1e-34 Identities = 287/414 (69%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 || ||||||| | ||||||| | | ||||| ||||| ||||||||| |||| ||||| Sbjct 6241 AGCAAAGCCCAAGGTTCAAGTCGAACACAAAGGAGAAACAAAAACTTTTACTCCCGAAGA 6300 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 |||||||| ||||| || | || |||||||| || || || | | || | | Sbjct 6301 GATTTCATCGATGGTGCTAATCAAGATGAAAGAGACCGCTGAGGCTTTCCTGGGAACGAC 6360 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 | || || || |||| || ||||| |||||||| || ||||| || ||||| Sbjct 6361 GTGCAAAGACGCTGTTGTTACCGTACCCGCCTATTTCAACGACAGTCAACGTCAGGCAAC 6420 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || || | || ||||| ||||| || ||||| || ||||| || || Sbjct 6421 CAAAGATGCCGGTGCCATCTCCGGATTAAACGTTCTCCGCATTATCAACGAACCGACTGC 6480 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 |||||| | || ||||| || ||| || ||| | || || ||| ||| | | | Sbjct 6481 TGCTGCTATCGCCTATGG-CTTGGACAAA-AAAGGTCACGGA-GAACGCAATGTCCTTAT 6537 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 || ||| | || || ||||| |||| ||| | || | |||||||| || | || Sbjct 6538 TTTCGATCTCGGCGGTGGAACCTTTGATGTCTCTATCCTAACTATTGAAGAAGGAATTTT 6597 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||||| || | ||| || ||||||||||| || || |||||| ||||||| Sbjct 6598 TGAAGTCAAATCTACCGCCGGCGATACTCATCTCGGCGGAGAAGATTTTGATAA 6651 >seq616 Length=1528 Score = 109 bits (120), Expect = 2e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || ||||||||||| |||||| ||| Sbjct 1327 ATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATTACTCTTGAAGTTGAAGGCTCT 1268 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | ||| || || ||||| ||||||||||||||||| || || Sbjct 1267 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 1208 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| | || || || || || ||||| | |||||| | || || || Sbjct 1207 CAGCGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 1148 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| |||| || || Sbjct 1147 ATTCAGAAGGAGTCAACCCTCCA 1125 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || ||||| || || ||||| || || || || ||| Sbjct 365 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTCT 306 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | ||| || || || || || ||||||||||| || || || Sbjct 305 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 246 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | |||||| | || || || || || ||||| | |||||| | || || || Sbjct 245 CAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAAC 186 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 185 ATCCAGAAGGA 175 >seq5658 Length=101664 Score = 102 bits (112), Expect = 3e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||| || | || || |||||||| |||||||||||||| || | || || || || | Sbjct 71363 CAGTGACCAACGCGGTTATTACTGTGCCCGCTTATTTCAACGACTCTCAGCGCCAGGCCA 71422 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 | |||||||| ||||| ||| ||||| | |||||||| || |||| || || ||||| | Sbjct 71423 CCAAAGATGCCGGACAAATTTCTGGTCTTAATGTTCTCCGTGTTATCAACGAGCCTACTG 71482 Query 451431 CAGCTGCTCTAGCATATGG 451449 | || || || || ||||| Sbjct 71483 CTGCCGCCCTTGCCTATGG 71501 >seq4622 Length=19983 Score = 98.7 bits (108), Expect = 4e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 || |||||||| || | ||| ||||||||||| | || || ||| | || | || ||| Sbjct 19772 AAGGGTGAAACCAAGTCCTTTACTCCTGAAGAAGTCTCGTCGATGATCCTCATCAAGATG 19831 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 || ||||| || ||| | |||| || |||| | || || || || ||||| ||| Sbjct 19832 AAGGAAACCGCCGAAGCGTTCCTTGGATCAACAGTGAAGGACGCCGTCATCACTGTCCCC 19891 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 ||||| ||||| || ||||| || ||||| ||||||||||| ||||| || | Sbjct 19892 GCTTACTTCAACGACAGCCAACGCCAGGCAACCAAAGATGCAGGTGCCATTGCCGGACTC 19951 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGC 451431 || || | || || || || || ||||| || Sbjct 19952 AACGTCTTGCGCATCATCAACGAGCCTACCGC 19983 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 || |||||||| || | || | ||||||||| | || || ||| | || | || ||| Sbjct 14450 AAGGGTGAAACCAAGTCCTTCACACCTGAAGAAGTCTCGTCGATGATCCTGATCAAGATG 14391 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 || ||||| || ||| || |||| || |||| | || || || || || || ||| Sbjct 14390 AAGGAAACCGCCGAAGCATTCCTTGGATCAACAGTGAAGGACGCCGTCATCACCGTCCCC 14331 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 ||||| ||||| || ||||| || ||||| ||||||||||| ||||| || | Sbjct 14330 GCTTACTTCAACGACAGCCAACGCCAGGCAACCAAAGATGCAGGTGCCATTGCCGGACTC 14271 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || || | || || || || || || || || || || Sbjct 14270 AACGTCTTGCGCATCATCAACGAGCCCACCGCGGCCGC 14233 >seq611 Length=17302 Score = 96.9 bits (106), Expect = 1e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || ||||| || || ||||| |||||| || Sbjct 5559 ATGCAGATCTTCGTCAAAACGCTCACCGGAAAAACCATCACCCTTGAGGTTGAAGGTTCG 5500 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | || || || |||||||||||||||||||| || ||||| Sbjct 5499 GATACCATCGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGATCAG 5440 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| | || || || | |||||||| | || | ||||||| || Sbjct 5439 CAGCGATTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCGGATTACAAC 5380 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 5379 ATTCAGAAGGA 5369 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || ||||| || || ||||| |||||| || Sbjct 5331 ATGCAGATCTTCGTGAAGACGCTCACAGGAAAAACCATCACCCTTGAGGTTGAAGGTTCC 5272 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || ||||| || || |||||||||||||| || || || Sbjct 5271 GATACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 5212 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | || ||||| || |||||||| | |||||| | || || || Sbjct 5211 CAGCGCCTCATCTTCGCCGGAAAACAGCTGGAAGATGGCCGCACTTTGTCCGACTACAAC 5152 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 5151 ATCCAGAAGGAGTCGACTCTCCAC 5128 Score = 87.8 bits (96), Expect = 7e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 || ||||| ||||| || || || || || || |||||||| || ||| ||||| | Sbjct 6174 ATCTTCGTCAAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGACACG 6115 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 ||||| | || ||||| |||||||||||||||||||| || || || || || Sbjct 6114 ATTGAGAACGTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAGCGC 6055 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATAT 391231 | |||||| | || || || || || ||||| | |||||| | || || || || Sbjct 6054 CTGATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACAT 5999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975570718754072