Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4388 134 1e-25 seq4443 107 1e-17 seq5658 104 2e-16 >seq4388 Length=30719 Score = 134 bits (148), Expect = 1e-25 Identities = 249/363 (69%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || |||||||||||||| || || | | ||||| || | |||| | | |||| ||| Sbjct 6654 CGGTTATCAAAATCTTCTCCGCCGAGATGAGTATCGCCGGCGGTAGATTTGACTTCAAAA 6595 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||| ||||||| || | | || |||||| ||||||||| || | ||| |||||| Sbjct 6594 ATTCCTTCTTCAATAGTTAGGATAGAGACATCAAAGGTTCCACCGCCGAGATCGAAAATA 6535 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || ||||| |||| || ||||| || | ||||| || | |||||||||||| Sbjct 6534 AGGACATTGCGTTCTCCGTGACCTTTTTTGTCCAAGCCATAGGCGATAGCAGCAGCAGTC 6475 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || ||||| | | ||| || | || | || || |||||||| || || Sbjct 6474 GGTTCGTTGATAATGCGGAGAACGTTTAATCCGGAGATGGCACCGGCATCTTTGGTTGCC 6415 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGT-TACTTCTTT 518319 || | ||| ||||| ||||| || || || |||| ||| || || | || || || Sbjct 6414 TGACGTTGACTGTCGTTGAAATAGGCGGGTACGGTAACAACAGCGTCTTTGCACGTCGTT 6355 Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 518379 ||| | |||| || || | |||||| || ||| | ||| |||||||| | ||| Sbjct 6354 CCCAGGA-AAGCCTCAGCGGTCTCTTTCATCTTGATTAGCACCATCGATGAAATCTCTTC 6296 Query 518380 Tgg 518382 || Sbjct 6295 GGG 6293 >seq4443 Length=182794 Score = 107 bits (118), Expect = 1e-17 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 870776 CCAAATACTATTACAAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAA 870835 ||||| | | | | ||||||| || || || | ||| || ||||| ||||| || | Sbjct 142550 CCAAAGATTCTCAAAAAGAAAGCGATCGTTGACTTTTCGTCGCCAAACATTGCAAAGCAG 142609 Query 870836 ATGCATATTGGACATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAA 870895 |||||| |||| || |||||| ||||||||||||| || ||| | | | | | || Sbjct 142610 ATGCATGTTGGTCACTTAAGAACAACTATTATTGGAGATGTTATCTCTCGCCTTATGGAG 142669 Query 870896 ATGTGTGGACACGATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGT 870955 | |||| |||||| |||| | |||||| |||||||||||||||| || || || Sbjct 142670 TTTGTTGGATTTGATGTTCTTCGTCTCAATCATTTGGGTGATTGGGGAACCCAGTTTGGA 142729 Query 870956 ATGTTAATTGCT 870967 ||| |||||||| Sbjct 142730 ATGCTAATTGCT 142741 >seq5658 Length=101664 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || | |||||| |||| || |||||||| || || || |||| | | ||||||| Sbjct 71510 TTGTCCAAACCATAGGCAAGGGCGGCAGCAGTAGGCTCGTTGATAACACGGAGAACATTA 71451 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||||| |||| ||| |||||||| ||||| || | || || ||||| ||||| || Sbjct 71450 AGACCAGAAATTTGTCCGGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTGAAATAAGCG 71391 Query 518288 GGAACAGTAATAACGGC 518304 || ||||||||||| || Sbjct 71390 GGCACAGTAATAACCGC 71374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780532897702804