Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq611 104 2e-17 seq5007 102 5e-17 seq616 100 2e-16 >seq611 Length=17302 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| |||||||| || | || |||| |||||||| |||||||| || Sbjct 9268 TCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAA 9327 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| ||||| ||||| | Sbjct 9328 ATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 9387 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| |||| ||| ||||| ||||| ||||| |||||||| Sbjct 9388 TCAATAGTGTCGGAACCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACG 9447 Query 34971 AA 34972 || Sbjct 9448 AA 9449 Score = 98.7 bits (108), Expect = 6e-16 Identities = 142/198 (72%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || ||||| ||| | || |||| |||| ||| |||||||| || Sbjct 5368 TTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAA 5427 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-- 34907 || | ||| ||||| ||| | || | || ||||| || ||||| || ||| Sbjct 5428 GATCAATCGCTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTGGCCTTCACGTT 5487 Query 34908 ---GATGCTAT-CGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGT 34963 |||| ||| ||| || | ||||| || | ||| ||||||||||| ||||| || Sbjct 5488 CTCGATGGTATCCGA---AC---CTTCAACCTCAAGGGTGATGGTTTTTCCGGTGAGCGT 5541 Query 34964 CTTCACAAAGATCTGCAT 34981 || || ||||||||||| Sbjct 5542 TTTGACGAAGATCTGCAT 5559 >seq5007 Length=89527 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| || || | ||| | || || || || |||||||| || Sbjct 22068 TCTTTCTGAATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAG 22127 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| ||||| || ||| Sbjct 22128 ATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTC 22187 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||||| |||| || || || || || ||||| || |||||| Sbjct 22188 TCGATGGTATCGGAGCCCTCAACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACA 22247 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 22248 AAGATCTGCAT 22258 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | ||| | || || || || |||||||| || Sbjct 22296 TCTTTCTGGATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAG 22355 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| ||||| || ||| Sbjct 22356 ATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTC 22415 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | || || |||| || || || || || ||||| || |||||| Sbjct 22416 TCGATGGTATCGGAGCCTTCGACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACA 22475 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 22476 AAGATCTGCAT 22486 >seq616 Length=1528 Score = 100 bits (110), Expect = 2e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| |||||||||||| | || |||| || ||||| |||||||| || Sbjct 402 TTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAA 461 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||||||| | || | || |||||||| ||||| || || Sbjct 462 AATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCAC--- 518 Query 34910 TGCTATCGAT--TCACCG-GCC-TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| | ||| ||| || || || | ||| || || || || ||||| || | Sbjct 519 -GTTCTCGATGGTGTCCGAGCCTTCCACTTCCAAGGTGATCGTCTTGCCGGTGAGCGTTT 577 Query 34966 TCACAAAGATCTGCAT 34981 | || ||||||||||| Sbjct 578 TGACGAAGATCTGCAT 593 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| || ||||| |||||||| || Sbjct 1137 TCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 1196 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| ||||||||| | || | || |||||||| ||||| |||||| || Sbjct 1197 ATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGAC--AT 1254 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| | | ||||| || | || || || ||||| ||||| ||||| | Sbjct 1255 TCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATCGTCTTTCCGGTGAGCGTCTTGA 1314 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 1315 CGAAGATCTGCAT 1327 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | | || |||| || ||||| |||||||| || Sbjct 174 TTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAA 233 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||||||| | || | || || ||||| ||||| |||||| Sbjct 234 AATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATT 293 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | |||| || || | ||| || || || || ||||| |||||||| Sbjct 294 TTCGATGGTATCAGAGCCCTCGACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCAC 353 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 354 GAAGATCTGCAT 365 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| || ||| | || |||| |||||||| |||||||| || Sbjct 908 TTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 967 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| ||||||||| | || | || || || || ||||| || ||| Sbjct 968 GATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTCACGTT 1027 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | | || || || | || ||||| || || || | |||||||| Sbjct 1028 CTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 1087 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 1088 AAAGATCTGCAT 1099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610517942352