Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq5658 114 1e-19
seq4388 102 7e-16
seq2264 100 2e-15
seq4443 93.3 3e-13
seq4386 91.5 1e-12
seq5782 89.7 4e-12
>seq5658
Length=101664
Score = 114 bits (126), Expect = 1e-19
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || ||||| || || ||||| || ||||| || || || || || ||||||||
Sbjct 71374 GCGGTTATTACTGTGCCCGCTTATTTCAACGACTCTCAGCGCCAGGCCACCAAAGATGCC 71433
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|||| ||| |||| ||||||||||| ||| ||||||| || ||||||||||| || |||
Sbjct 71434 GGACAAATTTCTGGTCTTAATGTTCTCCGTGTTATCAACGAGCCTACTGCTGCCGCCCTT 71493
Query 550520 GCATATGG 550527
|| |||||
Sbjct 71494 GCCTATGG 71501
>seq4388
Length=30719
Score = 102 bits (112), Expect = 7e-16
Identities = 263/395 (67%), Gaps = 13/395 (3%)
Strand=Plus/Plus
Query 550187 AAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGG 550246
|||||| | ||||| ||| || |||| | |||||||| | ||||||||||| |||
Sbjct 6155 AAACGTCTGATTGGTCGAAAATTCGATGACCCCGCTGTTCAGTCGGATATGAAGCACTGG 6214
Query 550247 CCTTTCCAAATTGTTAATGTTTCTGG----AAAACCTTATATTGAAGCTACTCATGAAGG 550302
|||||| ||| || | | | || ||| || | || ||| || ||||
Sbjct 6215 CCTTTC-AAAGTGATCACCTCCGAGGGAGCAAAGCCCAAGGTTCAAGTCGAACACAAAGG 6273
Query 550303 ATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACA 550362
| ||| ||| | || ||| | |||||||| ||||| |||| || |||||| |
Sbjct 6274 AGAAACAAAAACTTTTACTCCCGAAGAGATTTCATCGATGGTGCTAATCAAGATGAAAGA 6333
Query 550363 AACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCAT 550421
|| || ||||| | || | || || | || || || | || ||||| || |
Sbjct 6334 GACCGCTGAGGCTTTCCTGGGA-ACGACGTGCAAAGACGCTGTTGTTACCGTACCCGCCT 6392
Query 550422 ATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATG 550481
|||| || ||| |||||||| || || |||||||| || || | ||| | || |
Sbjct 6393 ATTTCAACGACAGTCAACGTCAGGCAACCAAAGATGCCGGTGCCATCTCCGGATTAAACG 6452
Query 550482 TTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATA 550541
|||| || |||||||| ||||| ||||||||||| | || ||||| | || ||| |
Sbjct 6453 TTCTCCGCATTATCAACGAACCGACTGCTGCTGCTATCGCCTATGGCTTGGACAAA---A 6509
Query 550542 ATGATCA---AGAACTTAATGTACTCATCTTTGAT 550573
| | ||| ||||| ||||| || || || |||
Sbjct 6510 AAGGTCACGGAGAACGCAATGTCCTTATTTTCGAT 6544
>seq2264
Length=15866
Score = 100 bits (110), Expect = 2e-15
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| |||||||| | | | || || | ||||| || || || || || || | ||||||
Sbjct 4682 GGACAAGAAGTCAAGCACGCCGTCGTCACTGTCCCGGCCTACTTCAACGATGCTCAACGT 4623
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
||||| || || ||||| || ||| |||||| | ||||| | ||||| ||||| |||
Sbjct 4622 CAAGCCACCAAGGATGCCGGCGTTATCGCTGGATTGAATGTAGTACGTATCATCAACGAA 4563
Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|||||||| || || |||| || || ||||||||
Sbjct 4562 CCTACTGCCGCCGCTATTGCCTACGGCCTTGATAA 4528
Score = 96.9 bits (106), Expect = 3e-14
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || || || | ||||||||||| || || ||||| || |||
Sbjct 5045 ACTGTCCCGGCCTACTTCAACGATGCTCAACGTCAAGCCACCAAGGATGCCGGTGTTATC 4986
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
||||| | |||||| | ||||| ||||| ||||||||||| || || |||| || |||
Sbjct 4985 GCTGGTTTGAATGTTGTACGTATCATCAACGAACCTACTGCCGCCGCTATTGCCTACGGA 4926
Query 550529 CTTGATAA 550536
||||||||
Sbjct 4925 CTTGATAA 4918
>seq4443
Length=182794
Score = 93.3 bits (102), Expect = 3e-13
Identities = 121/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723
|||| ||||| || ||||| ||||| || | |||||| |||| || || | | || |
Sbjct 142578 TTGACTTTTCGTCGCCAAACATTGCAAAGCAGATGCATGTTGGTCACTTAAGAACAACTA 142637
Query 930724 TTATTGGAGAATCTTTATGTAGATTATATGAATATTGT-GGAAGTAAAGTTCATCGAGTC 930782
|||||||||| | | | | | | |||| | |||| ||| | | |||| ||| ||
Sbjct 142638 TTATTGGAGATGTTATCTCTCGCCT-TATGGAGTTTGTTGGATTTGATGTTCTTCGTCTC 142696
Query 930783 AATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCT 930827
|||||| | |||||||||||||| || ||||| ||| ||||||||
Sbjct 142697 AATCATTTGGGTGATTGGGGAACCCAGTTTGGAATGCTAATTGCT 142741
>seq4386
Length=106676
Score = 91.5 bits (100), Expect = 1e-12
Identities = 113/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445
||||||||| | | || || | ||||| || || || || || || | || ||||| |
Sbjct 94121 AAGAAGTTAAGCACGCCGTCGTCACTGTCCCTGCTTACTTCAACGATGCCCAGCGTCAGG 94062
Query 550446 CTACTAAAGATGCTGGACGTATT-GCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504
| || || ||||| || |||| | ||||| | || ||| | ||||| ||||| ||||||
Sbjct 94061 CGACCAAGGATGCCGG-CGTAATCGCTGGTTTGAACGTTGTCCGTATCATCAACGAACCT 94003
Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
||||| || || |||| || |||||||||||
Sbjct 94002 ACTGCCGCCGCTATTGCCTACGGACTTGATAA 93971
>seq5782
Length=55174
Score = 89.7 bits (98), Expect = 4e-12
Identities = 158/230 (69%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 368608 TTTTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATA 368667
|| ||||||||||| || || | ||| |||||| ||||| |||||||| ||
Sbjct 11798 TTCTGGGGAACTCCGATCCCTCTTTGGGCGAGCGATGATTACGAAGAGATTGTTTGCATT 11739
Query 368668 GGTTCAATTAAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATT 368727
|| || ||| |||| ||| | || | || | | ||| | | ||||| ||| |
Sbjct 11738 GGCTCGATTGAAGAGTTGGAGAGCCTAACAGGCGAGAAAA---TCACAGATTTGCATCGT 11682
Query 368728 GATAAAATTGATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTT 368787
|| | || ||||| || ||||||| ||||||| ||||| || || || ||
Sbjct 11681 GAAAGCATCGATCATCTTGAAATTCCCTCAAAGACCGGAAAGGGGACCCTGAAGCGTGTG 11622
Query 368788 GAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCA 368837
|| |||||| ||||||||||| ||||| || || |||||||||| |||
Sbjct 11621 CCAGAAGTTTTCGATTGCTGGTTCGAATCTGGATCGATGCCTTATGCTCA 11572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028987471768660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |