Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5658 114 1e-19 seq4388 102 7e-16 seq2264 100 2e-15 seq4443 93.3 3e-13 seq4386 91.5 1e-12 seq5782 89.7 4e-12 >seq5658 Length=101664 Score = 114 bits (126), Expect = 1e-19 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || ||||| || ||||| || || || || || |||||||| Sbjct 71374 GCGGTTATTACTGTGCCCGCTTATTTCAACGACTCTCAGCGCCAGGCCACCAAAGATGCC 71433 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 |||| ||| |||| ||||||||||| ||| ||||||| || ||||||||||| || ||| Sbjct 71434 GGACAAATTTCTGGTCTTAATGTTCTCCGTGTTATCAACGAGCCTACTGCTGCCGCCCTT 71493 Query 550520 GCATATGG 550527 || ||||| Sbjct 71494 GCCTATGG 71501 >seq4388 Length=30719 Score = 102 bits (112), Expect = 7e-16 Identities = 263/395 (67%), Gaps = 13/395 (3%) Strand=Plus/Plus Query 550187 AAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGG 550246 |||||| | ||||| ||| || |||| | |||||||| | ||||||||||| ||| Sbjct 6155 AAACGTCTGATTGGTCGAAAATTCGATGACCCCGCTGTTCAGTCGGATATGAAGCACTGG 6214 Query 550247 CCTTTCCAAATTGTTAATGTTTCTGG----AAAACCTTATATTGAAGCTACTCATGAAGG 550302 |||||| ||| || | | | || ||| || | || ||| || |||| Sbjct 6215 CCTTTC-AAAGTGATCACCTCCGAGGGAGCAAAGCCCAAGGTTCAAGTCGAACACAAAGG 6273 Query 550303 ATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACA 550362 | ||| ||| | || ||| | |||||||| ||||| |||| || |||||| | Sbjct 6274 AGAAACAAAAACTTTTACTCCCGAAGAGATTTCATCGATGGTGCTAATCAAGATGAAAGA 6333 Query 550363 AACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCAT 550421 || || ||||| | || | || || | || || || | || ||||| || | Sbjct 6334 GACCGCTGAGGCTTTCCTGGGA-ACGACGTGCAAAGACGCTGTTGTTACCGTACCCGCCT 6392 Query 550422 ATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATG 550481 |||| || ||| |||||||| || || |||||||| || || | ||| | || | Sbjct 6393 ATTTCAACGACAGTCAACGTCAGGCAACCAAAGATGCCGGTGCCATCTCCGGATTAAACG 6452 Query 550482 TTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATA 550541 |||| || |||||||| ||||| ||||||||||| | || ||||| | || ||| | Sbjct 6453 TTCTCCGCATTATCAACGAACCGACTGCTGCTGCTATCGCCTATGGCTTGGACAAA---A 6509 Query 550542 ATGATCA---AGAACTTAATGTACTCATCTTTGAT 550573 | | ||| ||||| ||||| || || || ||| Sbjct 6510 AAGGTCACGGAGAACGCAATGTCCTTATTTTCGAT 6544 >seq2264 Length=15866 Score = 100 bits (110), Expect = 2e-15 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || |||||||| | | | || || | ||||| || || || || || || | |||||| Sbjct 4682 GGACAAGAAGTCAAGCACGCCGTCGTCACTGTCCCGGCCTACTTCAACGATGCTCAACGT 4623 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || || ||||| || ||| |||||| | ||||| | ||||| ||||| ||| Sbjct 4622 CAAGCCACCAAGGATGCCGGCGTTATCGCTGGATTGAATGTAGTACGTATCATCAACGAA 4563 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| || || |||| || || |||||||| Sbjct 4562 CCTACTGCCGCCGCTATTGCCTACGGCCTTGATAA 4528 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || || | ||||||||||| || || ||||| || ||| Sbjct 5045 ACTGTCCCGGCCTACTTCAACGATGCTCAACGTCAAGCCACCAAGGATGCCGGTGTTATC 4986 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | |||||| | ||||| ||||| ||||||||||| || || |||| || ||| Sbjct 4985 GCTGGTTTGAATGTTGTACGTATCATCAACGAACCTACTGCCGCCGCTATTGCCTACGGA 4926 Query 550529 CTTGATAA 550536 |||||||| Sbjct 4925 CTTGATAA 4918 >seq4443 Length=182794 Score = 93.3 bits (102), Expect = 3e-13 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 |||| ||||| || ||||| ||||| || | |||||| |||| || || | | || | Sbjct 142578 TTGACTTTTCGTCGCCAAACATTGCAAAGCAGATGCATGTTGGTCACTTAAGAACAACTA 142637 Query 930724 TTATTGGAGAATCTTTATGTAGATTATATGAATATTGT-GGAAGTAAAGTTCATCGAGTC 930782 |||||||||| | | | | | | |||| | |||| ||| | | |||| ||| || Sbjct 142638 TTATTGGAGATGTTATCTCTCGCCT-TATGGAGTTTGTTGGATTTGATGTTCTTCGTCTC 142696 Query 930783 AATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCT 930827 |||||| | |||||||||||||| || ||||| ||| |||||||| Sbjct 142697 AATCATTTGGGTGATTGGGGAACCCAGTTTGGAATGCTAATTGCT 142741 >seq4386 Length=106676 Score = 91.5 bits (100), Expect = 1e-12 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 ||||||||| | | || || | ||||| || || || || || || | || ||||| | Sbjct 94121 AAGAAGTTAAGCACGCCGTCGTCACTGTCCCTGCTTACTTCAACGATGCCCAGCGTCAGG 94062 Query 550446 CTACTAAAGATGCTGGACGTATT-GCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504 | || || ||||| || |||| | ||||| | || ||| | ||||| ||||| |||||| Sbjct 94061 CGACCAAGGATGCCGG-CGTAATCGCTGGTTTGAACGTTGTCCGTATCATCAACGAACCT 94003 Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| || || |||| || ||||||||||| Sbjct 94002 ACTGCCGCCGCTATTGCCTACGGACTTGATAA 93971 >seq5782 Length=55174 Score = 89.7 bits (98), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 368608 TTTTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATA 368667 || ||||||||||| || || | ||| |||||| ||||| |||||||| || Sbjct 11798 TTCTGGGGAACTCCGATCCCTCTTTGGGCGAGCGATGATTACGAAGAGATTGTTTGCATT 11739 Query 368668 GGTTCAATTAAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATT 368727 || || ||| |||| ||| | || | || | | ||| | | ||||| ||| | Sbjct 11738 GGCTCGATTGAAGAGTTGGAGAGCCTAACAGGCGAGAAAA---TCACAGATTTGCATCGT 11682 Query 368728 GATAAAATTGATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTT 368787 || | || ||||| || ||||||| ||||||| ||||| || || || || Sbjct 11681 GAAAGCATCGATCATCTTGAAATTCCCTCAAAGACCGGAAAGGGGACCCTGAAGCGTGTG 11622 Query 368788 GAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCA 368837 || |||||| ||||||||||| ||||| || || |||||||||| ||| Sbjct 11621 CCAGAAGTTTTCGATTGCTGGTTCGAATCTGGATCGATGCCTTATGCTCA 11572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028987471768660