Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq616 131 1e-25 seq4364 116 3e-21 seq871 113 4e-20 seq3368 102 6e-17 seq311 89.7 4e-13 >seq616 Length=1528 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || |||||||| |||| || || | |||| |||| ||| Sbjct 897 TGGAGGGTCGATTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGC 956 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| ||||| || || || ||||| ||||||||||| || || || Sbjct 957 TTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATCTTG 1016 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || ||||||||| ||||||| || ||||| || Sbjct 1017 GCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTC 1076 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 || || || ||||| ||||||||| | ||||||| Sbjct 1077 AAGGTCTTCACAAAGATCTGCATGCCTCCGCGAAG 1111 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || || ||||| |||| | ||| | | |||| || | || Sbjct 1124 ATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTG 1183 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||| ||||| || || || ||||| ||||| || ||||| || || Sbjct 1184 CTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 1243 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | |||||||| ||| ||||||||||| | ||| || ||||| Sbjct 1244 GGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATCGTCTTTCCGGT 1303 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 1304 GAGCGTCTTGACGAAGATCTGCATG 1328 >seq4364 Length=177085 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| ||||| || || || |||||||||| || ||| | | || || | || Sbjct 156943 ATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTG 157002 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||||||||| ||||| || |||||||||||||| ||||| || || Sbjct 157003 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTT 157062 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | ||||| || || ||||| || |||| ||| ||||| || Sbjct 157063 GGCCTTCACGTTCTCAATGGTGTCCGAACCCTCGACTTCCAGGGTGATCGTCTTGCCAGT 157122 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 157123 GAGGGTCTTCACGAAGATCTGCAT 157146 >seq871 Length=2590 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| ||||| || ||||| ||| || |||| | | || || | ||||| || Sbjct 695 GTCGATTCCTTTTGGATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCG 636 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || ||||||||||| ||||| || ||||| |||||||| || || || || ||| Sbjct 635 GCGAAGATCAAACGCTGCTGATCAGGGGGAATACCTTCTTTGTCCTGGATCTTCGCCTTT 576 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | ||||||| ||||||||| || |||| ||| || ||||| | || Sbjct 575 ACGTTCTCGATGCTGTCAGAACCTTCCACTTCCAGGGTGATCGTCTTCCCGGTGAGGGTC 516 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 515 TTCACGAAGATCTGCAT 499 >seq3368 Length=489 Score = 102 bits (112), Expect = 6e-17 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 101318 TCCAATTG-CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 ||||| || |||||| ||||| ||||| ||||| ||||| || ||||||||||| ||||| Sbjct 316 TCCAAGTGACTTACCAGCAAAGATCAAGCGCTGCTGATCTGGGGGAATGCCTTCCTTATC 257 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 || || || || ||| |||| | |||||||| || ||||| || |||| || Sbjct 256 CTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGCCCTCGACTTCCAGGGTGATGGT 197 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || ||||| || ||||| Sbjct 196 CTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 164 >seq311 Length=48857 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| ||||| || || || ||||| |||| || ||||| | | || || | || Sbjct 17139 ATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCGAGCTG 17080 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 ||| || || || ||||||||||| ||||| || ||||| ||||| ||| Sbjct 17079 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCCTTA 17031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396250223862738