Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq616 131 1e-25
seq4364 116 3e-21
seq871 113 4e-20
seq3368 102 6e-17
seq311 89.7 4e-13
>seq616
Length=1528
Score = 131 bits (144), Expect = 1e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| ||||| || || |||||||| |||| || || | |||| |||| |||
Sbjct 897 TGGAGGGTCGATTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGC 956
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || ||||| ||||| || || || ||||| ||||||||||| || || ||
Sbjct 957 TTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATCTTG 1016
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | ||||| || ||||||||| ||||||| || ||||| ||
Sbjct 1017 GCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTC 1076
Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481
|| || || ||||| ||||||||| | |||||||
Sbjct 1077 AAGGTCTTCACAAAGATCTGCATGCCTCCGCGAAG 1111
Score = 118 bits (130), Expect = 8e-22
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| ||||| || || || || || ||||| |||| | ||| | | |||| || | ||
Sbjct 1124 ATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTG 1183
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || ||||| ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 1184 CTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 1243
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
||| ||| | || | |||||||| ||| ||||||||||| | ||| || |||||
Sbjct 1244 GGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATCGTCTTTCCGGT 1303
Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470
| || || || || |||||||||
Sbjct 1304 GAGCGTCTTGACGAAGATCTGCATG 1328
>seq4364
Length=177085
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| ||||| ||||| || || || |||||||||| || ||| | | || || | ||
Sbjct 156943 ATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTG 157002
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || ||||||||||| ||||| || |||||||||||||| ||||| || ||
Sbjct 157003 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTT 157062
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| || | || | ||||| || || ||||| || |||| ||| ||||| ||
Sbjct 157063 GGCCTTCACGTTCTCAATGGTGTCCGAACCCTCGACTTCCAGGGTGATCGTCTTGCCAGT 157122
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 157123 GAGGGTCTTCACGAAGATCTGCAT 157146
>seq871
Length=2590
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332
|| ||||| ||||| || ||||| ||| || |||| | | || || | ||||| ||
Sbjct 695 GTCGATTCCTTTTGGATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCG 636
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
|| || ||||||||||| ||||| || ||||| |||||||| || || || || |||
Sbjct 635 GCGAAGATCAAACGCTGCTGATCAGGGGGAATACCTTCTTTGTCCTGGATCTTCGCCTTT 576
Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452
|| | || | ||||||| ||||||||| || |||| ||| || ||||| | ||
Sbjct 575 ACGTTCTCGATGCTGTCAGAACCTTCCACTTCCAGGGTGATCGTCTTCCCGGTGAGGGTC 516
Query 101453 TTTACAAATATCTGCAT 101469
|| || || ||||||||
Sbjct 515 TTCACGAAGATCTGCAT 499
>seq3368
Length=489
Score = 102 bits (112), Expect = 6e-17
Identities = 115/153 (75%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 101318 TCCAATTG-CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376
||||| || |||||| ||||| ||||| ||||| ||||| || ||||||||||| |||||
Sbjct 316 TCCAAGTGACTTACCAGCAAAGATCAAGCGCTGCTGATCTGGGGGAATGCCTTCCTTATC 257
Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436
|| || || || ||| |||| | |||||||| || ||||| || |||| ||
Sbjct 256 CTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGCCCTCGACTTCCAGGGTGATGGT 197
Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||||| | || || ||||| || |||||
Sbjct 196 CTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 164
>seq311
Length=48857
Score = 89.7 bits (98), Expect = 4e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||||||||| ||||| || || || ||||| |||| || ||||| | | || || | ||
Sbjct 17139 ATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCGAGCTG 17080
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374
||| || || || ||||||||||| ||||| || ||||| ||||| |||
Sbjct 17079 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCCTTA 17031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396250223862738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |