Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2264 116 2e-20 seq5658 107 1e-17 seq616 105 4e-17 seq611 105 4e-17 seq4443 96.9 2e-14 seq4386 93.3 3e-13 seq4684 86.0 4e-11 >seq2264 Length=15866 Score = 116 bits (128), Expect = 2e-20 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 474653 TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCA 474712 ||| | || ||| |||| ||| | |||||| | | || ||||| ||| ||| || Sbjct 4748 TTTGCTCCCGAAGAAATCTCTGCCATGGTTCTTGGAAAGATGAAGGAAATCGCCGAATCG 4689 Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 || || ||||||||||| | | || || | ||||| || || || || || ||| || Sbjct 4688 TACCTCGGACAAGAAGTCAAGCACGCCGTCGTCACTGTCCCGGCCTACTTCAACGATGCT 4629 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 ||||||||||| || || ||||| || || || || | ||||| ||||||| || Sbjct 4628 CAACGTCAAGCCACCAAGGATGCCGGCGTTATCGCTGGATTGAATGTAGTACGTATCATC 4569 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || ||||| || || ||||| |||| || || ||||||||||| Sbjct 4568 AACGAACCTACTGCCGCCGCTATTGCCTACGGCCTTGATAAGAA 4525 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || ||| ||||||||||||| || || ||||| || || Sbjct 5045 ACTGTCCCGGCCTACTTCAACGATGCTCAACGTCAAGCCACCAAGGATGCCGGTGTTATC 4986 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||| | |||||| ||||||| || || ||||| || || ||||| |||| || || Sbjct 4985 GCTGGTTTGAATGTTGTACGTATCATCAACGAACCTACTGCCGCCGCTATTGCCTACGGA 4926 Query 474866 CTTGATAAGAA 474876 ||||||||||| Sbjct 4925 CTTGATAAGAA 4915 >seq5658 Length=101664 Score = 107 bits (118), Expect = 1e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||| || || ||||| || || ||||| || || || || |||||||| Sbjct 71374 GCGGTTATTACTGTGCCCGCTTATTTCAACGACTCTCAGCGCCAGGCCACCAAAGATGCC 71433 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| |||| | |||||||||||| | ||| |||| || || || || || ||||| ||| Sbjct 71434 GGACAAATTTCTGGTCTTAATGTTCTCCGTGTTATCAACGAGCCTACTGCTGCCGCCCTT 71493 Query 474857 GCTTATGGTCTTGATAAGA 474875 || |||||| | || |||| Sbjct 71494 GCCTATGGTTTGGACAAGA 71512 >seq616 Length=1528 Score = 105 bits (116), Expect = 4e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || |||||||| || || || | || || || || ||||||||||||||||| Sbjct 1172 ATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTT 1231 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| ||||||| || || || |||| | | | |||||| ||||| Sbjct 1232 GTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAAT 1291 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| ||||| ||||| || || Sbjct 1292 CGTCTTTCCGGTGAGCGTCTTGACGAAGATCTG 1324 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || |||||||| || ||||| || || || || || || ||||||||||| || Sbjct 210 ATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCTTT 269 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||||| ||| || ||||||| | || |||||||| Sbjct 270 GTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCGACCTCCAGGGTAAT 329 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| || || Sbjct 330 CGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 362 >seq611 Length=17302 Score = 105 bits (116), Expect = 4e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || ||||| || || || || || || || || | ||||| Sbjct 9237 ACGAAGACGAAGAACGAGATGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGT 9296 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || |||||||| || ||||| || || || || || || |||||||| Sbjct 9297 GCGGCCATCTTCCAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCC 9356 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| |||||| ||||||||| || | | | || || Sbjct 9357 TTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCGGAACCTTCAACCTCGAG 9416 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 ||| || || || || ||||| ||||| ||||| Sbjct 9417 GGTGATGGTCTTTCCAGTGAGGGTCTTCACGAA 9449 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || |||||||| || || || || || ||||| || || |||||||||||||| Sbjct 4463 ATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGGGAATTCCTTCCTT 4522 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| || || || ||||| || | | ||| |||||||| Sbjct 4523 GTCTTGGATCTTGGCCTTCACGTTCTCGATAGTGTCCGATCCTTCGACTTCCAGGGTAAT 4582 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| |||||||| || Sbjct 4583 GGTCTTGCCAGTGAGCGTCTTCACGAAAATCTG 4615 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || ||||| || || ||| || || || ||||| | || || Sbjct 5339 CGGAGACGAAGGACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAGAGGGTG 5398 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| | |||||||| || || || | || || ||||| || ||||||||| Sbjct 5399 CGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCT 5458 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||| ||||| || || || || ||||| | | | |||||| Sbjct 5459 TCCTTATCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAACCTTCAACCTCAAGG 5518 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| || || ||||| || || Sbjct 5519 GTGATGGTTTTTCCGGTGAGCGTTTTGACGAAGATCTG 5556 Score = 86.0 bits (94), Expect = 4e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || ||||| || || || ||||| ||||||||||||||||| Sbjct 5612 ATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCTGGAGGAATTCCTTCCTT 5671 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||| || ||||| ||||| | | | |||||||| || Sbjct 5672 GTCCTGGATCTTGGCTTTCACGTTCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGAT 5731 Query 480737 AGTTTTACCGGT 480748 ||||| || || Sbjct 5732 GGTTTTTCCTGT 5743 >seq4443 Length=182794 Score = 96.9 bits (106), Expect = 2e-14 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 || ||||| || ||||| ||||||||| | |||||| |||| ||||| ||| | || || Sbjct 142580 GACTTTTCGTCGCCAAACATTGCAAAGCAGATGCATGTTGGTCACTTAAGAACAACTATT 142639 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGT-GGATGTGAAGTACAAAGAATAAA 817218 ||||| || | | | | | | |||| | ||||| |||| ||| || | | | || Sbjct 142640 ATTGGAGATGTTATCTCTCGCCT-TATGGAGTTTGTTGGATTTGATGTTCTTCGTCTCAA 142698 Query 817219 TCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 |||| | |||||||||||||| || ||||| ||| ||||||| Sbjct 142699 TCATTTGGGTGATTGGGGAACCCAGTTTGGAATGCTAATTGC 142740 >seq4386 Length=106676 Score = 93.3 bits (102), Expect = 3e-13 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 474653 TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCA 474712 ||| | || ||| | || ||| | |||||| | | || |||| ||| ||| || Sbjct 94191 TTTGCTCCCGAAGAGATCTCTGCCATGGTTCTTGGAAAGATGAGGGAAATCGCTGAATCG 94132 Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 || || ||| ||||||| | | || || | ||||| || || || || || ||| | Sbjct 94131 TACCTAGGAAAAGAAGTTAAGCACGCCGTCGTCACTGTCCCTGCTTACTTCAACGATGCC 94072 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 || ||||| || || || ||||| || ||| || ||| | || ||| | ||||| || Sbjct 94071 CAGCGTCAGGCGACCAAGGATGCCGGCGTAATCGCTGGTTTGAACGTTGTCCGTATCATC 94012 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || ||||| || || ||||| |||| || || ||||||||||| Sbjct 94011 AACGAACCTACTGCCGCCGCTATTGCCTACGGACTTGATAAGAA 93968 >seq4684 Length=226209 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || ||||| || || ||||| || || |||||||||||||||||||| ||||| Sbjct 8835 CCGGCGAAAATCAGTCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCC 8894 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 |||||| |||||| || || | | | || |||||||| || || || || | | Sbjct 8895 TTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCAGTCAAA 8954 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| |||||||| || Sbjct 8955 GTCTTGACGAAAATCTG 8971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267928951433432