Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5716 140 4e-28 seq5329 84.2 3e-11 >seq5716 Length=132174 Score = 140 bits (154), Expect = 4e-28 Identities = 462/714 (65%), Gaps = 27/714 (4%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || |||| || || ||||| || || ||||||||||| ||||| || || ||| | Sbjct 121947 TCGCAGATCGAAACCGGAACTCCTTACATGCTTTACAAAGATGCATGCAATCGAAAGTCT 122006 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||||||||||||| |||||| |||||||||| ||||| ||||| | ||||| Sbjct 122007 AACCAGAAGAATTTGGGAACGATCAAGTGCTCAAATCTGTGCACCGAAATAGTGCAGTAC 122066 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG-TATGT 76074 | ||||| |||||||||||| |||| || ||| | || | || | ||| Sbjct 122067 TCGTCCCCAGATGAAGTCGCTGTTTGCAATCTGGCCTCCGTCG-CTTTGAACAGATTTGT 122125 Query 76075 CAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTAC 76134 || || || | || || || |||||||| ||||| || || || ||| | | || Sbjct 122126 GAAGGATGACA---AGACCTTCGACTATGAAAAGCTTCACGAGATTACCAAGGTCATCAC 122182 Query 76135 CAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTC 76194 ||| | ||| | | |||||| | || | ||||| | | || || || Sbjct 122183 ACGCAATTTGAACAAAATAATTGACTGCAACTACTATCCTATACCGGAAGCTGAAACCTC 122242 Query 76195 TAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTT 76254 ||| | ||| || | || || || | || ||||| ||| | || |||| || || | Sbjct 122243 TAACAAGCGTCATCGCCCAATAGGAATCGGAGTTCAGGGTTTGGCTGATGCCTTCATGCT 122302 Query 76255 GTGCCGCTACGCATTTGATTCAG--ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAA 76312 ||| || | || ||| | | || || |||| || ||||||||| Sbjct 122303 AATGCGCCACCCGTT--CACCAGCCCTCAGGCTCGAGATGTGAACAAGCGAATCTTTGAA 122360 Query 76313 ACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTAT 76372 || || || ||||| | ||||| ||| || ||| | ||||| | ||| | || Sbjct 122361 ACAATTTACTACGCAGCTCTGGAAGCGTCATGCGAACTTGCTGAGAAATATGGTCCTTAC 122420 Query 76373 GAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGG------ 76426 || || | |||||| ||||| | | |||||| | || |||| ||| |||||| Sbjct 122421 GAAACCTATGAGGGGTCTCCAGTGAGCCAAGGAATTCTGCAGTATGAAATGTGGCAAACA 122480 Query 76427 GAAG--GTGAAACCAAGCTCAACTAC----------GACTGGGATGTTCTCAAGGAACGC 76474 |||| | |||||| | |||| ||||||| |||||| || Sbjct 122481 GAAGACGGCAAACCAGTCGTCCCTACAGATCAGTGTGACTGGGCATCTCTCAAAGAGAAA 122540 Query 76475 ATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACC 76534 ||| | || | || | || |||||||| | | || || ||||| || || || ||| Sbjct 122541 ATCGCGAAGCACGGGGTACGCAACAGTCTGCTTCTTGCCCCGATGCCGACCGCATCAACC 122600 Query 76535 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 || |||||| | || || ||||||| | | || || ||||| | ||||| ||| Sbjct 122601 GCTCAAATCCTTGGAAACAATGAATCCATCGAGCCGTACACGTCCAACATTTAC 122654 >seq5329 Length=523892 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAAT-CTGGAAAGTGTAC 13611 || ||||| || |||| ||||| ||| | || || ||| | |||| || ||| || Sbjct 503894 GGAATTCCGAAACTGGACGACGCCAACGACGCCGGAACG-CGCAATTCTCATTTGTGCAC 503836 Query 13612 TCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGT 13671 || ||| | || ||||| ||||| || ||||| || |||||| |||| ||| ||| || Sbjct 503835 CCTGATTCTGACTGAGGGAGATTCAGCCAAAACACTTGCGGTTTCGGGACTCGGTGTTGT 503776 Query 13672 TGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA 13711 || || || | |||||||||||||| | || |||||| Sbjct 503775 GGGACGCGACCGTTACGGTGTGTTCCCTATGCGTGGTAAA 503736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596526095161920