Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 140 4e-28
seq5329 84.2 3e-11
>seq5716
Length=132174
Score = 140 bits (154), Expect = 4e-28
Identities = 462/714 (65%), Gaps = 27/714 (4%)
Strand=Plus/Plus
Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955
|| |||| || || ||||| || || ||||||||||| ||||| || || ||| |
Sbjct 121947 TCGCAGATCGAAACCGGAACTCCTTACATGCTTTACAAAGATGCATGCAATCGAAAGTCT 122006
Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015
||||| |||||||||||||| |||||| |||||||||| ||||| ||||| | |||||
Sbjct 122007 AACCAGAAGAATTTGGGAACGATCAAGTGCTCAAATCTGTGCACCGAAATAGTGCAGTAC 122066
Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG-TATGT 76074
| ||||| |||||||||||| |||| || ||| | || | || | |||
Sbjct 122067 TCGTCCCCAGATGAAGTCGCTGTTTGCAATCTGGCCTCCGTCG-CTTTGAACAGATTTGT 122125
Query 76075 CAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTAC 76134
|| || || | || || || |||||||| ||||| || || || ||| | | ||
Sbjct 122126 GAAGGATGACA---AGACCTTCGACTATGAAAAGCTTCACGAGATTACCAAGGTCATCAC 122182
Query 76135 CAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTC 76194
||| | ||| | | |||||| | || | ||||| | | || || ||
Sbjct 122183 ACGCAATTTGAACAAAATAATTGACTGCAACTACTATCCTATACCGGAAGCTGAAACCTC 122242
Query 76195 TAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTT 76254
||| | ||| || | || || || | || ||||| ||| | || |||| || || |
Sbjct 122243 TAACAAGCGTCATCGCCCAATAGGAATCGGAGTTCAGGGTTTGGCTGATGCCTTCATGCT 122302
Query 76255 GTGCCGCTACGCATTTGATTCAG--ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAA 76312
||| || | || ||| | | || || |||| || |||||||||
Sbjct 122303 AATGCGCCACCCGTT--CACCAGCCCTCAGGCTCGAGATGTGAACAAGCGAATCTTTGAA 122360
Query 76313 ACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTAT 76372
|| || || ||||| | ||||| ||| || ||| | ||||| | ||| | ||
Sbjct 122361 ACAATTTACTACGCAGCTCTGGAAGCGTCATGCGAACTTGCTGAGAAATATGGTCCTTAC 122420
Query 76373 GAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGG------ 76426
|| || | |||||| ||||| | | |||||| | || |||| ||| ||||||
Sbjct 122421 GAAACCTATGAGGGGTCTCCAGTGAGCCAAGGAATTCTGCAGTATGAAATGTGGCAAACA 122480
Query 76427 GAAG--GTGAAACCAAGCTCAACTAC----------GACTGGGATGTTCTCAAGGAACGC 76474
|||| | |||||| | |||| ||||||| |||||| ||
Sbjct 122481 GAAGACGGCAAACCAGTCGTCCCTACAGATCAGTGTGACTGGGCATCTCTCAAAGAGAAA 122540
Query 76475 ATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACC 76534
||| | || | || | || |||||||| | | || || ||||| || || || |||
Sbjct 122541 ATCGCGAAGCACGGGGTACGCAACAGTCTGCTTCTTGCCCCGATGCCGACCGCATCAACC 122600
Query 76535 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588
|| |||||| | || || ||||||| | | || || ||||| | ||||| |||
Sbjct 122601 GCTCAAATCCTTGGAAACAATGAATCCATCGAGCCGTACACGTCCAACATTTAC 122654
>seq5329
Length=523892
Score = 84.2 bits (92), Expect = 3e-11
Identities = 116/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAAT-CTGGAAAGTGTAC 13611
|| ||||| || |||| ||||| ||| | || || ||| | |||| || ||| ||
Sbjct 503894 GGAATTCCGAAACTGGACGACGCCAACGACGCCGGAACG-CGCAATTCTCATTTGTGCAC 503836
Query 13612 TCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGT 13671
|| ||| | || ||||| ||||| || ||||| || |||||| |||| ||| ||| ||
Sbjct 503835 CCTGATTCTGACTGAGGGAGATTCAGCCAAAACACTTGCGGTTTCGGGACTCGGTGTTGT 503776
Query 13672 TGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA 13711
|| || || | |||||||||||||| | || ||||||
Sbjct 503775 GGGACGCGACCGTTACGGTGTGTTCCCTATGCGTGGTAAA 503736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596526095161920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |